Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00289 ATGACTATGATGGTCGCTGCAAGAGCAATCGCAACCACAACAGCTCGATCAGTGGTGCGATCGACCAGGCTCCCTCTTCAATCTCCATTGCTATATGTGTTTGCTGAGCGGAAATCTCACTCCCACACTCTTCTCATTCGTCAGATGAGCTCCGAGGCGCCGAGCGTTGTTACTCGTCTTCAAAGTTCTGGATTGTTTCGAAGTCAAGGCCTTATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCTTTAAGGTTCATAATCCAGCCAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGCAAAAGGGAAACCGATGATGCTATTTCTTCAGCTCATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGGAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGCTTGGACAACTGATAACCTTGGAGCAAGGAAAACCCTTAAAGGAAGCTATGGGTGAGGTTACCTATGGAGCCAGCTTTATTGAGTTCTTTTCTGAGGAAGCAAAACGAGTATATGGTGACATAATCTCACCAACTTTAGCTGATCGACGGCTCTTTGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTATTACCCCTTGGAACTTTCCATTGGCTATGATTACAAGAAAGGCTGGTCCCCGTCATGAGTATTTGTGTTTCAATTGTTTACTGTGTCATTCATTTTACTTTTATGAGAACATTATCTTTCCAGTTAATGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCTGCCGAACTTACCCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCTGCAGGAGTCGTGAATGTGGTTATGGGAGATGCTCCAGCTGTTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCTGGAACTGTTAAAAGGGTGTCCTTAGAACTTGGTGGTAATGCCCCTTGCATAGTCTTCGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCTATTGCAGCGAAGTTCCGAAATACTGGACAGACTTGTGTTTGTGCGAATAGAATTTTTGTTCAAGAAGGTATATACGAGAAATTTGCTGATGCTTTCTCAAAAGCTGTGCAAAATCTGCAAGTTGGTGATGGTTTCGGTGAAGGTGTATCTCTGCTCGAGGGTCCTTTAATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCACCACAAAGGGAGCAAAAGTTCTTCTTGGAGGTAAAAGACACAGCCTTGGAATGACATTTTTTGAGCCTACAGTTCTTACTGACGTGAAGAATGACATGCTTTTATCCAGGGAGGAAATATTTGGTCCCGTGGCACCCTTACTGCCATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCGGCTTACATATTCACAAATAGTATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATATGGATTGGTTGGTGTTAATGAAGGCTTGATTTCTACAGAGGTGGCCCCATTTGGTGGCGTTAAACAGTCGGGCCTTGGTCGGGAGGGGTCAAAATATGGGCTGGACGAGTATCTTGAGCTGAAATATGTTTGCCTGGGGAACATGGGCGGCAACTAG 1725 45.1 MTMMVAARAIATTTARSVVRSTRLPLQSPLLYVFAERKSHSHTLLIRQMSSEAPSVVTRLQSSGLFRSQGLIGGKWIDAYDGKTFKVHNPANGEVITNVPLMGKRETDDAISSAHDAFKSWSKLTAADRSNRLRKWYELLIAHKEELGQLITLEQGKPLKEAMGEVTYGASFIEFFSEEAKRVYGDIISPTLADRRLFVLKQPVGVVGVITPWNFPLAMITRKAGPRHEYLCFNCLLCHSFYFYENIIFPVNVGPALACGCTVVIKPAELTPLTALAAAELSLQAGIPAGVVNVVMGDAPAVGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIVFDDADVDVAVKGAIAAKFRNTGQTCVCANRIFVQEGIYEKFADAFSKAVQNLQVGDGFGEGVSLLEGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVLTDVKNDMLLSREEIFGPVAPLLPFRTEEEAIALANDTNAGLAAYIFTNSIQRSWRVTEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGLDEYLELKYVCLGNMGGN 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1399262 1410962 + CmaCh20G002890.1 Cma20g00289 316103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00289 574 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 340 347 IPR029510 GO:0016491
Cma20g00289 574 CDD ALDH_F5_SSADH_GabD 87 568 - -
Cma20g00289 574 Pfam Aldehyde dehydrogenase family 251 566 IPR015590 GO:0016491
Cma20g00289 574 Pfam Aldehyde dehydrogenase family 76 226 IPR015590 GO:0016491
Cma20g00289 574 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 252 571 - -
Cma20g00289 574 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 63 227 - -
Cma20g00289 574 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 82 560 IPR016162 GO:0016491
Cma20g00289 574 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 344 535 IPR016163 GO:0016620
Cma20g00289 574 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 252 571 - -
Cma20g00289 574 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 63 227 - -
Cma20g00289 574 SUPERFAMILY ALDH-like 53 226 IPR016161 GO:0016491
Cma20g00289 574 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 368 379 IPR016160 GO:0016491
Cma20g00289 574 SUPERFAMILY ALDH-like 248 570 IPR016161 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00289 K17761 SSADH; succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] - csv:101217352 901.353
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00001 Cma-Chr12:1241 Cma20g00289 Cma-Chr20:1399262 3.24E-103 dispersed
Cma12g01154 Cma-Chr12:9099711 Cma20g00289 Cma-Chr20:1399262 1.12E-53 dispersed
Cma17g00680 Cma-Chr17:5695590 Cma20g00289 Cma-Chr20:1399262 2.04E-53 dispersed
Cma20g00289 Cma-Chr20:1399262 Cma11g01675 Cma-Chr11:11016110 7.55E-60 dispersed
Cma02g00667 Cma-Chr2:4051800 Cma20g00289 Cma-Chr20:1399262 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00604 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 71.0 2.9e-212 735.3
Cma11g00601 . 6 501 Aldehyde Dehydrogenase Gene Family AT3G24503 69.5 2.3e-209 725.7
Cma12g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 4.8e-159 558.5
Cma05g00003 . 34 562 Aldehyde Dehydrogenase Gene Family AT3G24503 51.9 4.5e-157 552.0
Cma11g00104 . 62 546 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 9.4e-155 544.3
Cma11g00104 . 1 546 Aldehyde Dehydrogenase Gene Family AT3G48000 78.9 9.1e-257 883.2
Cma12g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 4.8e-250 860.9
Cma05g00003 . 1 562 Aldehyde Dehydrogenase Gene Family AT3G48000 72.0 1.3e-242 836.3
Cma10g00604 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.9 1.0e-162 570.9
Cma11g00601 . 17 501 Aldehyde Dehydrogenase Gene Family AT3G48000 53.6 2.0e-158 556.6
Cma12g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.6 3.2e-169 592.0
Cma11g00104 . 1 390 Aldehyde Dehydrogenase Gene Family AT1G23800 73.3 1.7e-167 586.3
Cma05g00003 . 1 406 Aldehyde Dehydrogenase Gene Family AT1G23800 71.4 2.4e-164 575.9
Cma10g00604 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.6 8.0e-104 374.8
Cma11g00601 . 17 345 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 4.4e-102 369.0
Cma09g00785 CST 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 62.6 3.4e-179 625.5
Cma01g01383 CST 16 489 Aldehyde Dehydrogenase Gene Family AT4G34240 64.6 4.5e-179 625.2
Cma09g00784 . 3 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.3 3.2e-177 619.0
Cma01g01383 CST 77 487 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 5.1e-178 621.3
Cma09g00784 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 3.1e-175 612.1
Cma09g00785 CST 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.0 4.9e-173 604.7
Cma02g01246 . 59 475 Aldehyde Dehydrogenase Gene Family AT1G44170 52.0 7.0e-119 424.9
Cma02g01246 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 55.4 8.2e-156 547.7
Cma16g00646 . 5 401 Aldehyde Dehydrogenase Gene Family AT4G36250 60.2 1.8e-147 520.0
Cma20g00289 . 39 571 Aldehyde Dehydrogenase Gene Family AT1G79440 72.4 5.3e-225 777.7
Cma02g00667 . 33 540 Aldehyde Dehydrogenase Gene Family AT1G79440 72.4 7.2e-222 767.3
Cma11g01675 . 12 506 Aldehyde Dehydrogenase Gene Family AT2G14170 83.5 7.0e-242 833.9
Cma03g00850 . 212 612 Aldehyde Dehydrogenase Gene Family AT2G14170 66.1 2.8e-158 556.2
Cma10g00151 . 1 496 Aldehyde Dehydrogenase Gene Family AT1G74920 80.8 1.6e-247 852.4
Cma10g00151 . 1 496 Aldehyde Dehydrogenase Gene Family AT3G48170 81.3 2.0e-250 862.1
Cma12g01154 . 1 501 Aldehyde Dehydrogenase Gene Family AT2G24270 89.2 5.3e-267 917.1
Cma05g01236 CCT,CST 1 119 Aldehyde Dehydrogenase Gene Family AT2G24270 73.9 6.7e-44 176.0
Cma13g00931 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.2 6.3e-261 897.1
Cma17g00366 CST 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.0 3.9e-277 951.0
Cma08g01274 CST 1 560 Aldehyde Dehydrogenase Gene Family AT3G66658 69.4 1.0e-248 856.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00289 Cma_Chr20 FPKM 40.862705 48.642296 106.549065 107.72641 36.193848 32.283791 35.506889 26.93891 27.092705 27.203072