Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00289 ATGACTATGATGGTCGCTGCAAGAGCAATCGCAACCACAACAGCTCGATCAGTGGTGCGATCGACCAGGCTCCCTCTTCAATCTCCATTGCTATATGTGTTTGCTGAGCGGAAATCTCACTCCCACACTCTTCTCATTCGTCAGATGAGCTCCGAGGCGCCGAGCGTTGTTACTCGTCTTCAAAGTTCTGGATTGTTTCGAAGTCAAGGCCTTATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCTTTAAGGTTCATAATCCAGCCAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGCAAAAGGGAAACCGATGATGCTATTTCTTCAGCTCATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGGAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGCTTGGACAACTGATAACCTTGGAGCAAGGAAAACCCTTAAAGGAAGCTATGGGTGAGGTTACCTATGGAGCCAGCTTTATTGAGTTCTTTTCTGAGGAAGCAAAACGAGTATATGGTGACATAATCTCACCAACTTTAGCTGATCGACGGCTCTTTGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTATTACCCCTTGGAACTTTCCATTGGCTATGATTACAAGAAAGGCTGGTCCCCGTCATGAGTATTTGTGTTTCAATTGTTTACTGTGTCATTCATTTTACTTTTATGAGAACATTATCTTTCCAGTTAATGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCTGCCGAACTTACCCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCTGCAGGAGTCGTGAATGTGGTTATGGGAGATGCTCCAGCTGTTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCTGGAACTGTTAAAAGGGTGTCCTTAGAACTTGGTGGTAATGCCCCTTGCATAGTCTTCGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCTATTGCAGCGAAGTTCCGAAATACTGGACAGACTTGTGTTTGTGCGAATAGAATTTTTGTTCAAGAAGGTATATACGAGAAATTTGCTGATGCTTTCTCAAAAGCTGTGCAAAATCTGCAAGTTGGTGATGGTTTCGGTGAAGGTGTATCTCTGCTCGAGGGTCCTTTAATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCACCACAAAGGGAGCAAAAGTTCTTCTTGGAGGTAAAAGACACAGCCTTGGAATGACATTTTTTGAGCCTACAGTTCTTACTGACGTGAAGAATGACATGCTTTTATCCAGGGAGGAAATATTTGGTCCCGTGGCACCCTTACTGCCATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCGGCTTACATATTCACAAATAGTATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATATGGATTGGTTGGTGTTAATGAAGGCTTGATTTCTACAGAGGTGGCCCCATTTGGTGGCGTTAAACAGTCGGGCCTTGGTCGGGAGGGGTCAAAATATGGGCTGGACGAGTATCTTGAGCTGAAATATGTTTGCCTGGGGAACATGGGCGGCAACTAG 1725 45.1 MTMMVAARAIATTTARSVVRSTRLPLQSPLLYVFAERKSHSHTLLIRQMSSEAPSVVTRLQSSGLFRSQGLIGGKWIDAYDGKTFKVHNPANGEVITNVPLMGKRETDDAISSAHDAFKSWSKLTAADRSNRLRKWYELLIAHKEELGQLITLEQGKPLKEAMGEVTYGASFIEFFSEEAKRVYGDIISPTLADRRLFVLKQPVGVVGVITPWNFPLAMITRKAGPRHEYLCFNCLLCHSFYFYENIIFPVNVGPALACGCTVVIKPAELTPLTALAAAELSLQAGIPAGVVNVVMGDAPAVGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIVFDDADVDVAVKGAIAAKFRNTGQTCVCANRIFVQEGIYEKFADAFSKAVQNLQVGDGFGEGVSLLEGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVLTDVKNDMLLSREEIFGPVAPLLPFRTEEEAIALANDTNAGLAAYIFTNSIQRSWRVTEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGLDEYLELKYVCLGNMGGN 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1399262 1410962 + CmaCh20G002890.1 Cma20g00289 316103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00289 574 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 340 347 IPR029510 GO:0016491
Cma20g00289 574 CDD ALDH_F5_SSADH_GabD 87 568 - -
Cma20g00289 574 Pfam Aldehyde dehydrogenase family 251 566 IPR015590 GO:0016491
Cma20g00289 574 Pfam Aldehyde dehydrogenase family 76 226 IPR015590 GO:0016491
Cma20g00289 574 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 252 571 - -
Cma20g00289 574 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 63 227 - -
Cma20g00289 574 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 82 560 IPR016162 GO:0016491
Cma20g00289 574 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 344 535 IPR016163 GO:0016620
Cma20g00289 574 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 252 571 - -
Cma20g00289 574 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 63 227 - -
Cma20g00289 574 SUPERFAMILY ALDH-like 53 226 IPR016161 GO:0016491
Cma20g00289 574 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 368 379 IPR016160 GO:0016491
Cma20g00289 574 SUPERFAMILY ALDH-like 248 570 IPR016161 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00001 Cma-Chr12:1241 Cma20g00289 Cma-Chr20:1399262 3.24E-103 dispersed
Cma12g01154 Cma-Chr12:9099711 Cma20g00289 Cma-Chr20:1399262 1.12E-53 dispersed
Cma17g00680 Cma-Chr17:5695590 Cma20g00289 Cma-Chr20:1399262 2.04E-53 dispersed
Cma20g00289 Cma-Chr20:1399262 Cma11g01675 Cma-Chr11:11016110 7.55E-60 dispersed
Cma02g00667 Cma-Chr2:4051800 Cma20g00289 Cma-Chr20:1399262 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00289 K17761 - csv:101217352 901.353