Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g00290 | ATGTTCCATACCACCAAGAAGCCCTCCTCTATGACTCCTCATGATAGGCCAATGTGTGTCCAAGGAGATTCTGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGATGCTGTTACTCAGCTCGGAGGCCCTGATAAAGCCACTCCCAAGACGATCATGAGGGTCATGGGCGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAGTTTAGGCTCGGGAAACAACCCCACAAGGAATTCAATGATCAATCGATAAAGGATGGCATGAGAGCTTCCGCCATGGAACTTCAGAGAAACAGTGGATCTTCTTCAACCTTAATGGAGCGTAGTATGAACGAAATGCAATTGGAAGTTCAGAGACGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAAGCTCAAGGCAAGTACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTAGCCGGCGAAAACATGGCCGTCGCCAGCACCGCCGCCGGACCTTTCAAAACCACTTCCAACAATATGGGAACAACCAGTACCAACCTTGTTCCAGACGCCGCCATCAAAGACTTCATTTCACCTCATCCACCTCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTACCTCCGAACCGCCGCCGCCTCCGCCGCCTCTCATCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCTGGCGCCGGTAAGGCCCCCATTTTCTGGCCCGACGATCTCCGACTCCAGCACTTAGGAACCCCTTCAGCCACCTTAGTACCGCCGCCGCCTTCCATTGGCAGCCCACCGGACTTGGACTCTCTACAACTGGAAATGTATGAATCAAAACCGCCACCCCTGTCACCGCTGCTCGTTGGCAACGACGCGATGCATGAAAAGAAGTTCGACACGTCGATAAAGCTTGAGAGGCCGTCACCACGGCAGTCGTCGGGACATTCCGACGAAAGGGTGAATAATAATAATAATGGTATGCCCAACAATAGTAACCCTACGATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA | 1098 | 51.82 | MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASAMELQRNSGSSSTLMERSMNEMQLEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAVASTAAGPFKTTSNNMGTTSTNLVPDAAIKDFISPHPPHTFPPFQDMNNLFTSEPPPPPPPLIDCLKKPSPFISGAGKAPIFWPDDLRLQHLGTPSATLVPPPPSIGSPPDLDSLQLEMYESKPPPLSPLLVGNDAMHEKKFDTSIKLERPSPRQSSGHSDERVNNNNNGMPNNSNPTMSQPQGRNSSFG | 365 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 1412786 | 1416098 | + | CmaCh20G002900.1 | Cma20g00290 | 316104 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g00290 | 365 | MobiDBLite | consensus disorder prediction | 324 | 365 | - | - | |
Cma20g00290 | 365 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cma20g00290 | 365 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 1 | 228 | IPR044848 | GO:0003700 | |
Cma20g00290 | 365 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 33 | 88 | IPR006447 | GO:0003677 | |
Cma20g00290 | 365 | Pfam | MYB-CC type transfactor, LHEQLE motif | 129 | 168 | IPR025756 | - | |
Cma20g00290 | 365 | Pfam | Myb-like DNA-binding domain | 36 | 84 | IPR001005 | - | |
Cma20g00290 | 365 | SUPERFAMILY | Homeodomain-like | 32 | 88 | IPR009057 | - | |
Cma20g00290 | 365 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 30 | 90 | IPR017930 | - | |
Cma20g00290 | 365 | Gene3D | - | 32 | 90 | - | - | |
Cma20g00290 | 365 | MobiDBLite | consensus disorder prediction | 269 | 288 | - | - | |
Cma20g00290 | 365 | MobiDBLite | consensus disorder prediction | 296 | 365 | - | - | |
Cma20g00290 | 365 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR APL | 1 | 228 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g01192 | Cma-Chr10:8839571 | Cma20g00290 | Cma-Chr20:1412786 | 8.02E-121 | dispersed | |
Cma14g01088 | Cma-Chr14:7468727 | Cma20g00290 | Cma-Chr20:1412786 | 5.68E-58 | dispersed | |
Cma19g01121 | Cma-Chr19:9211380 | Cma20g00290 | Cma-Chr20:1412786 | 1.76E-120 | wgd | |
Cma02g00669 | Cma-Chr2:4062932 | Cma20g00290 | Cma-Chr20:1412786 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36981 | PF00249 | Myb_DNA-binding | 2.00E-06 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g00290 | - | - | cmos:111448435 | 691.034 |