Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00290 ATGTTCCATACCACCAAGAAGCCCTCCTCTATGACTCCTCATGATAGGCCAATGTGTGTCCAAGGAGATTCTGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGATGCTGTTACTCAGCTCGGAGGCCCTGATAAAGCCACTCCCAAGACGATCATGAGGGTCATGGGCGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAGTTTAGGCTCGGGAAACAACCCCACAAGGAATTCAATGATCAATCGATAAAGGATGGCATGAGAGCTTCCGCCATGGAACTTCAGAGAAACAGTGGATCTTCTTCAACCTTAATGGAGCGTAGTATGAACGAAATGCAATTGGAAGTTCAGAGACGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAAGCTCAAGGCAAGTACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTAGCCGGCGAAAACATGGCCGTCGCCAGCACCGCCGCCGGACCTTTCAAAACCACTTCCAACAATATGGGAACAACCAGTACCAACCTTGTTCCAGACGCCGCCATCAAAGACTTCATTTCACCTCATCCACCTCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTACCTCCGAACCGCCGCCGCCTCCGCCGCCTCTCATCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCTGGCGCCGGTAAGGCCCCCATTTTCTGGCCCGACGATCTCCGACTCCAGCACTTAGGAACCCCTTCAGCCACCTTAGTACCGCCGCCGCCTTCCATTGGCAGCCCACCGGACTTGGACTCTCTACAACTGGAAATGTATGAATCAAAACCGCCACCCCTGTCACCGCTGCTCGTTGGCAACGACGCGATGCATGAAAAGAAGTTCGACACGTCGATAAAGCTTGAGAGGCCGTCACCACGGCAGTCGTCGGGACATTCCGACGAAAGGGTGAATAATAATAATAATGGTATGCCCAACAATAGTAACCCTACGATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA 1098 51.82 MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASAMELQRNSGSSSTLMERSMNEMQLEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAVASTAAGPFKTTSNNMGTTSTNLVPDAAIKDFISPHPPHTFPPFQDMNNLFTSEPPPPPPPLIDCLKKPSPFISGAGKAPIFWPDDLRLQHLGTPSATLVPPPPSIGSPPDLDSLQLEMYESKPPPLSPLLVGNDAMHEKKFDTSIKLERPSPRQSSGHSDERVNNNNNGMPNNSNPTMSQPQGRNSSFG 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1412786 1416098 + CmaCh20G002900.1 Cma20g00290 316104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00290 365 MobiDBLite consensus disorder prediction 324 365 - -
Cma20g00290 365 MobiDBLite consensus disorder prediction 1 24 - -
Cma20g00290 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 228 IPR044848 GO:0003700
Cma20g00290 365 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Cma20g00290 365 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Cma20g00290 365 Pfam Myb-like DNA-binding domain 36 84 IPR001005 -
Cma20g00290 365 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Cma20g00290 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Cma20g00290 365 Gene3D - 32 90 - -
Cma20g00290 365 MobiDBLite consensus disorder prediction 269 288 - -
Cma20g00290 365 MobiDBLite consensus disorder prediction 296 365 - -
Cma20g00290 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01192 Cma-Chr10:8839571 Cma20g00290 Cma-Chr20:1412786 8.02E-121 dispersed
Cma14g01088 Cma-Chr14:7468727 Cma20g00290 Cma-Chr20:1412786 5.68E-58 dispersed
Cma19g01121 Cma-Chr19:9211380 Cma20g00290 Cma-Chr20:1412786 1.76E-120 wgd
Cma02g00669 Cma-Chr2:4062932 Cma20g00290 Cma-Chr20:1412786 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36981 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00290 - - cmos:111448435 691.034