Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00290 ATGTTCCATACCACCAAGAAGCCCTCCTCTATGACTCCTCATGATAGGCCAATGTGTGTCCAAGGAGATTCTGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGATGCTGTTACTCAGCTCGGAGGCCCTGATAAAGCCACTCCCAAGACGATCATGAGGGTCATGGGCGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAGTTTAGGCTCGGGAAACAACCCCACAAGGAATTCAATGATCAATCGATAAAGGATGGCATGAGAGCTTCCGCCATGGAACTTCAGAGAAACAGTGGATCTTCTTCAACCTTAATGGAGCGTAGTATGAACGAAATGCAATTGGAAGTTCAGAGACGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAAGCTCAAGGCAAGTACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTAGCCGGCGAAAACATGGCCGTCGCCAGCACCGCCGCCGGACCTTTCAAAACCACTTCCAACAATATGGGAACAACCAGTACCAACCTTGTTCCAGACGCCGCCATCAAAGACTTCATTTCACCTCATCCACCTCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTACCTCCGAACCGCCGCCGCCTCCGCCGCCTCTCATCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCTGGCGCCGGTAAGGCCCCCATTTTCTGGCCCGACGATCTCCGACTCCAGCACTTAGGAACCCCTTCAGCCACCTTAGTACCGCCGCCGCCTTCCATTGGCAGCCCACCGGACTTGGACTCTCTACAACTGGAAATGTATGAATCAAAACCGCCACCCCTGTCACCGCTGCTCGTTGGCAACGACGCGATGCATGAAAAGAAGTTCGACACGTCGATAAAGCTTGAGAGGCCGTCACCACGGCAGTCGTCGGGACATTCCGACGAAAGGGTGAATAATAATAATAATGGTATGCCCAACAATAGTAACCCTACGATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA 1098 51.82 MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASAMELQRNSGSSSTLMERSMNEMQLEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAVASTAAGPFKTTSNNMGTTSTNLVPDAAIKDFISPHPPHTFPPFQDMNNLFTSEPPPPPPPLIDCLKKPSPFISGAGKAPIFWPDDLRLQHLGTPSATLVPPPPSIGSPPDLDSLQLEMYESKPPPLSPLLVGNDAMHEKKFDTSIKLERPSPRQSSGHSDERVNNNNNGMPNNSNPTMSQPQGRNSSFG 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1412786 1416098 + CmaCh20G002900.1 Cma20g00290 316104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00290 365 MobiDBLite consensus disorder prediction 324 365 - -
Cma20g00290 365 MobiDBLite consensus disorder prediction 1 24 - -
Cma20g00290 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 228 IPR044848 GO:0003700
Cma20g00290 365 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Cma20g00290 365 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Cma20g00290 365 Pfam Myb-like DNA-binding domain 36 84 IPR001005 -
Cma20g00290 365 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Cma20g00290 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Cma20g00290 365 Gene3D - 32 90 - -
Cma20g00290 365 MobiDBLite consensus disorder prediction 269 288 - -
Cma20g00290 365 MobiDBLite consensus disorder prediction 296 365 - -
Cma20g00290 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00290 - - - cmos:111448435 691.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01192 Cma-Chr10:8839571 Cma20g00290 Cma-Chr20:1412786 8.02E-121 dispersed
Cma14g01088 Cma-Chr14:7468727 Cma20g00290 Cma-Chr20:1412786 5.68E-58 dispersed
Cma19g01121 Cma-Chr19:9211380 Cma20g00290 Cma-Chr20:1412786 1.76E-120 wgd
Cma02g00669 Cma-Chr2:4062932 Cma20g00290 Cma-Chr20:1412786 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g01228 . 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cma14g01894 . 51 289 G2-like Transcription Factor Family AT3G24120 59.1 3.8e-63 239.2
Cma20g00290 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 3.5e-40 162.9
Cma19g01121 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.8e-40 161.8
Cma02g00669 . 23 168 G2-like Transcription Factor Family AT3G24120 61.7 7.8e-40 161.8
Cma10g01192 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.7e-39 160.6
Cma19g00201 . 12 160 G2-like Transcription Factor Family AT3G24120 51.9 4.7e-37 152.5
Cma07g00372 . 60 178 G2-like Transcription Factor Family AT3G24120 66.9 6.2e-37 152.1
Cma19g00216 . 150 347 G2-like Transcription Factor Family AT5G16560 51.5 1.2e-40 164.9
Cma09g00194 CCT 1 164 G2-like Transcription Factor Family AT5G42630 56.8 1.4e-38 157.1
Cma12g00506 CCT,CST 13 151 G2-like Transcription Factor Family AT5G42630 58.6 7.9e-37 151.4
Cma04g02062 . 20 258 G2-like Transcription Factor Family AT1G25550 51.6 2.6e-50 196.4
Cma15g00910 . 20 257 G2-like Transcription Factor Family AT1G25550 53.4 1.0e-49 194.5
Cma03g00158 . 64 367 G2-like Transcription Factor Family AT5G05090 54.6 1.5e-74 276.9
Cma07g01099 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 5.3e-72 268.5
Cma14g00494 . 1 253 G2-like Transcription Factor Family AT5G05090 60.1 3.3e-66 249.2
Cma06g00034 . 1 274 G2-like Transcription Factor Family AT5G05090 51.7 1.3e-65 247.3
Cma06g01228 . 12 316 G2-like Transcription Factor Family AT4G13640 56.3 1.2e-61 234.2
Cma14g01894 . 44 336 G2-like Transcription Factor Family AT4G13640 50.3 2.1e-53 206.8
Cma06g01228 . 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cma14g01894 . 51 289 G2-like Transcription Factor Family AT3G24120 59.1 3.8e-63 239.2
Cma20g00290 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 3.5e-40 162.9
Cma19g01121 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.8e-40 161.8
Cma02g00669 . 23 168 G2-like Transcription Factor Family AT3G24120 61.7 7.8e-40 161.8
Cma10g01192 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.7e-39 160.6
Cma19g00201 . 12 160 G2-like Transcription Factor Family AT3G24120 51.9 4.7e-37 152.5
Cma07g00372 . 60 178 G2-like Transcription Factor Family AT3G24120 66.9 6.2e-37 152.1
Cma06g01737 . 38 269 G2-like Transcription Factor Family AT1G69580 50.4 2.3e-40 163.7
Cma05g00862 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 9.1e-37 151.8
Cma19g01121 . 1 379 G2-like Transcription Factor Family AT1G79430 53.8 7.8e-87 318.2
Cma10g01192 . 1 340 G2-like Transcription Factor Family AT1G79430 54.6 4.4e-82 302.4
Cma20g00290 . 1 365 G2-like Transcription Factor Family AT1G79430 52.7 2.5e-77 286.6
Cma02g00669 . 1 359 G2-like Transcription Factor Family AT1G79430 52.4 3.3e-77 286.2
Cma14g01894 . 52 225 G2-like Transcription Factor Family AT1G79430 59.8 9.3e-40 161.8
Cma06g01228 . 26 204 G2-like Transcription Factor Family AT1G79430 55.7 2.1e-39 160.6
Cma06g01737 . 77 285 G2-like Transcription Factor Family AT3G04030 59.4 3.1e-47 186.4
Cma06g01737 . 77 269 G2-like Transcription Factor Family AT5G18240 50.5 1.6e-38 157.5
Cma07g00373 . 76 319 G2-like Transcription Factor Family AT2G01060 60.7 2.8e-56 216.1
Cma03g00611 . 84 327 G2-like Transcription Factor Family AT2G01060 59.3 1.9e-52 203.4
Cma07g01099 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 1.3e-88 323.9
Cma03g00158 . 64 367 G2-like Transcription Factor Family AT3G10760 60.8 3.0e-88 322.8
Cma06g00034 . 1 277 G2-like Transcription Factor Family AT3G10760 58.8 8.6e-80 294.7
Cma14g00494 . 1 258 G2-like Transcription Factor Family AT3G10760 56.6 2.3e-72 270.0
Cma06g00034 . 1 205 G2-like Transcription Factor Family AT2G40970 62.5 1.5e-60 230.3
Cma07g01099 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 7.4e-60 228.0
Cma03g00158 . 64 266 G2-like Transcription Factor Family AT2G40970 58.8 1.4e-58 223.8
Cma14g00494 . 1 192 G2-like Transcription Factor Family AT2G40970 59.0 3.1e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36981 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00290 Cma_Chr20 FPKM 12.539858 13.670758 15.619661 14.291427 5.428734 5.504201 4.213044 1.420127 0.973633 1.335018