Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00302 ATGAAGTTCTATTCAGTATCAGCGTTTCCTTTGTTTTTTGTTATTGTTCATCTACTTCCCTTTGCCATTGCGGACCTCGAATCCGACAAGCAAGCTCTTCTTGACTTTGCATCTTCGGTTCCACATCGTCGGAGCCTCAACTGGAACAACACTGCCTCTGTATGCACAACTTGGGTTGGCATTACTTGCAGTGAAGATGGAACTCATGTGGTTACCCTCCGGTTACCGGGGATCGGACTTGTCGGTTCGATTCCTTCTAACACTCTAGGGAAACTTCATGGTCTCAAGGTTCTTAGTCTCCGTTCCAACCTCCTTAGCGGAAGAATACCGTCCGATATCACCTCACTTCCTTCTCTTCAATATCTTTTTCTCCAACGGAATAACTTCTCTGGTGGTGTTCCGTCCTCCTTTTCTCCTACTCTTAACGTATTGGACCTATCGTTCAATTCATTAGAAGGGAAGATTCCAAAGACTATACAAAATTTGACTCAACTAACTGGATTGAACCTTCAGAACAACAATCTTTCTGGTTCAATACCGGATATCGACCTCCCGAAGCTCAAGCATTTCAATATAAGTTATAACCATCTCATTGGTTCTATTCCGACTTCTTTTAATACATTCCCGAGTTCGTCGTTCATTGGAAATCCTTTATTATGTGGAGCGCCTGTAAACGCTTGCTCCGTAGACCTTTCTCCAGCTCCTAATGCTCCATCTTCACCTGCCATTTCTCAAAAGCAGAGCTCGAAAAAACTGAAGATGGGAGTTATCATTGCTATTGCAGTTGGTGGATTCTTCCTTCTATTCCTTGGAGTTCTTTTTATGGTTTTGTGTTGTTTAAGGAAAAAGGATGGTGAACACTCCGGCACAAGAAAAGGGAAGGTTTCGGGTGGCGGGAGAAGTGAAAAACCGAAAGAGGAGTTCGGTAGTGGCGTGCAGGAGCCTGAGAAAAACAAGCTGGTGTTTTTTGAAGGCTGTTCGTTTAACTTTGATCTTGAAGATCTATTGAGAGCTTCAGCTGAAGTGCTTGGAAAGGGCAGCTATGGAACAGCTTATAAAGCTGTTCTGGAGGAACCTACCACTGTTGTCGTGAAAAGGTTGAAGGAAGTGGTGGTGGGGAAGAGGGAGTTTGAACAACAAATGGAGGTTGTGGGAAGGATCACGCAGCACCCGAACGTCATGCCACTCCGAGCGTATTATTACTCGAAGGATGAAAAGCTCCTCGTTTATGATTACGTCCCGGGAGGCAGCTTGTCATCACTTTTGCATGGAAACAGAGGAGGGGAAAGAACTCCGCTCGACTGGGACTCGAGAGTGAAGATCGCTCTTGCAACGGCGAAGGGAATTGCTCAAATCCATACAGTGGGCGGTCCGAAATTCACCCATGGAAATATCAAGGCCTCAAACGTTCTCCTAACTCAAGATGTGAATGCCTGTGTTTCCGACTTTGGCCTTACTCCTCTTATGAATGTCCCAACTTCTCGAACTGCAGATTATCGTGCGCCCGAGGTGATCGAAGCTCGGAAACACACACACAAGTCAGATGTTTACAGCTTTGGTGTTCTTCTTCTTGAAATGTTAACTGGAAAAGCTCCCCTGCAATCACCACGTCGTGACGATATGGTCGATCTCCCTCGGTGGGTCCAGTCTGTTGTGAGGGAGGAATGGACAGCTGAGGTTTTCGATGTCGAGCTAATGAGGTACCAGAATATCGAAGAAGAGATGGTGCAGATGTTACAAATAGCAATGACTTGTGTAGCGAAGTTGCCCGACATGAGACCGAGCATGGACGAAGTCGTTAGAATGATCGAAGAAATCCGGCAATCTGACTCGGAGAACCGGCCATCGTCCGAAGAGAACAAATCGAAGGACTCAAATGTGCAGACCCCATGA 1893 46.01 MKFYSVSAFPLFFVIVHLLPFAIADLESDKQALLDFASSVPHRRSLNWNNTASVCTTWVGITCSEDGTHVVTLRLPGIGLVGSIPSNTLGKLHGLKVLSLRSNLLSGRIPSDITSLPSLQYLFLQRNNFSGGVPSSFSPTLNVLDLSFNSLEGKIPKTIQNLTQLTGLNLQNNNLSGSIPDIDLPKLKHFNISYNHLIGSIPTSFNTFPSSSFIGNPLLCGAPVNACSVDLSPAPNAPSSPAISQKQSSKKLKMGVIIAIAVGGFFLLFLGVLFMVLCCLRKKDGEHSGTRKGKVSGGGRSEKPKEEFGSGVQEPEKNKLVFFEGCSFNFDLEDLLRASAEVLGKGSYGTAYKAVLEEPTTVVVKRLKEVVVGKREFEQQMEVVGRITQHPNVMPLRAYYYSKDEKLLVYDYVPGGSLSSLLHGNRGGERTPLDWDSRVKIALATAKGIAQIHTVGGPKFTHGNIKASNVLLTQDVNACVSDFGLTPLMNVPTSRTADYRAPEVIEARKHTHKSDVYSFGVLLLEMLTGKAPLQSPRRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKLPDMRPSMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1479484 1482457 - CmaCh20G003020.1 Cma20g00302 316116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00302 630 PANTHER OS05G0588300 PROTEIN 10 630 - -
Cma20g00302 630 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Cma20g00302 630 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
Cma20g00302 630 Gene3D Transferase(Phosphotransferase) domain 1 413 629 - -
Cma20g00302 630 MobiDBLite consensus disorder prediction 605 621 - -
Cma20g00302 630 PANTHER RECEPTOR-LIKE KINASE 10 630 - -
Cma20g00302 630 CDD STKc_IRAK 343 606 - -
Cma20g00302 630 Gene3D Phosphorylase Kinase; domain 1 305 412 - -
Cma20g00302 630 MobiDBLite consensus disorder prediction 605 630 - -
Cma20g00302 630 ProSiteProfiles Protein kinase domain profile. 337 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00302 630 Gene3D Ribonuclease Inhibitor 183 228 IPR032675 -
Cma20g00302 630 MobiDBLite consensus disorder prediction 285 311 - -
Cma20g00302 630 Pfam Leucine Rich Repeat 186 205 IPR001611 GO:0005515
Cma20g00302 630 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515
Cma20g00302 630 SUPERFAMILY Protein kinase-like (PK-like) 341 604 IPR011009 -
Cma20g00302 630 Pfam Leucine rich repeat 82 129 IPR001611 GO:0005515
Cma20g00302 630 Pfam Protein kinase domain 340 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00302 630 SUPERFAMILY L domain-like 39 224 - -
Cma20g00302 630 ProSitePatterns Protein kinases ATP-binding region signature. 343 374 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00682 Cma20g00302 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00285 Cma-Chr3:3793710 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma05g01321 Cma-Chr5:9993107 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma07g01209 Cma-Chr7:6647454 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma10g00590 Cma-Chr10:2696267 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma11g00586 Cma-Chr11:2810031 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma12g01230 Cma-Chr12:9622730 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma15g00321 Cma-Chr15:1490536 Cma20g00302 Cma-Chr20:1479484 6.92E-98 dispersed
Cma16g00080 Cma-Chr16:351159 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma18g01292 Cma-Chr18:9958632 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma20g00302 Cma-Chr20:1479484 Cma02g00682 Cma-Chr2:4175665 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69376 PF00069 Pkinase 8.80E-37 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00302 - - csv:101221378 1070.84