Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00305 ATGGATCTCCTCCTCCTTGAGAAGGCTCTAATCGGCCTCTTCATCGCCATGGTTCTTGCCATCGCCATTTCCAAGTTACGCGGCAAGCGATTCAAGCTTCCGCCGGGGCCGTTGCCGGTGCCTATATTCGGAAACTGGCTCCAGGTCGGCGATGACTTGAACCACCGCAATCTGACAGAACTTGCCAATAAATTCGGCGATATTTTCATGCTCCGGATGGGACAGAGGAGCCTCGTGGTGGTTTCCTCGCCGGAACTGGCCAAGGAAGTGCTCCACACGCAGGGAGTCGAGTTTGGATCTCGAACCAGAAACGTCGTTTTCGACATCTTCACCGGTAAAGGTCAGGATATGGTCTTCACCGTATATGGTGAGCATTGGAGGAAAATGAGACGGATCATGACAGTTCCGTTTTTCACTAACAAAGTGGTCCAGCAATACCGTCAGGGATGGGAGGATGAGGCCGCTAGTGTAGTGGAGGATGTGAAGAAGAATCCAGAATCGGCGACGACCGGAGTCGTTCTCCGGCAGCGATTGCAGCTTATGATGTACAACAACATGTACAGGATTATGTTCGACAGAAGATTCGAGAGTGAAGACGATCCTCTGTTTCTCAAACTTAGGGCTCTGAACGGAGAGAGGAGCCGATTAGCGCAGAGCTTCGATTACAACTATGGCGACTTCATCCCTATCTTGAGGCCGTTCTTGAGAGGATATCTCAAAACGTGCAAGGAAGTCAAGGAAACAAGGCTCAAACTCTTCAAGGATTATTTTGTCGATGAGAGGAAGAAATTGGCGAACACGAAGAAGACGACAAACGAGGGATTGAAATGTGCAATTGATCATATGTTGGATGCGCAACAGAAGGGAGAAATCAACGAAGACAATCTGCTTTACATTGTTGAGAATATCAATGTTGCAGCAATTGAAACAACGTTGTGGTCAATTGAATGGGGGATTGCGGAGCTAGTGAACCACCCAGAAATCCAAAGGAAGTTGAGGAATGAGCTCGACACTGTACTCGGACCCGGGGTTCAAATTACTGAGCCGGACGCCATCAAGCTCCCATACCTCCAAGCCGTGATCAAGGAGACCCTCCGCCTTCGCATGGCTATTCCTTTGCTTGTGCCCCATATGAACCTCCACAACGCCAAGCTAGGCGGCTACGACATTCCAGCTGAGAGCAAGATCTTGGTCAATGCATGGTGGCTTGCTAACAACCCAGCCAACTGGAAGAACCCAGAAGAGTTCCGCCCCGAGAGGTTCTTGGAGGAGGAGTCCAAGGTAGAGGCCAACGGCAACGATTTCAGATACCTACCCTTCGGTGTTGGGCGAAGGAGCTGTCCTGGCATCATCCTGGCTTTGCCTATCCTTGCCATCACAATTGGGCGTTTGGTTCAGAACTTTGAGCTCCTTCCCCCTCCTGGTCACTCCAAGTTGGACACCACAGAAAAAGGTGGGCAATTTAGCTTACACATATTGAAGCACTCCACCATTGTTGCTAAGCCCAGGGTGTTCTAG 1518 50.26 MDLLLLEKALIGLFIAMVLAIAISKLRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTELANKFGDIFMLRMGQRSLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRQGWEDEAASVVEDVKKNPESATTGVVLRQRLQLMMYNNMYRIMFDRRFESEDDPLFLKLRALNGERSRLAQSFDYNYGDFIPILRPFLRGYLKTCKEVKETRLKLFKDYFVDERKKLANTKKTTNEGLKCAIDHMLDAQQKGEINEDNLLYIVENINVAAIETTLWSIEWGIAELVNHPEIQRKLRNELDTVLGPGVQITEPDAIKLPYLQAVIKETLRLRMAIPLLVPHMNLHNAKLGGYDIPAESKILVNAWWLANNPANWKNPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILAITIGRLVQNFELLPPPGHSKLDTTEKGGQFSLHILKHSTIVAKPRVF 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1493472 1495781 + CmaCh20G003050.1 Cma20g00305 316119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00305 505 Pfam Cytochrome P450 34 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00305 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Cma20g00305 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 505 - -
Cma20g00305 505 SUPERFAMILY Cytochrome P450 34 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00305 505 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00305 505 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00305 505 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00305 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 505 - -
Cma20g00305 505 Gene3D Cytochrome P450 21 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00305 505 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00305 505 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00305 505 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00305 505 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00305 505 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00305 505 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00305 505 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00305 505 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g00305 505 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g01011 Cma20g00305 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00735 Cma-Chr1:3865362 Cma20g00305 Cma-Chr20:1493472 0 dispersed
Cma05g00731 Cma-Chr5:4119909 Cma20g00305 Cma-Chr20:1493472 0 dispersed
Cma12g00931 Cma-Chr12:7220212 Cma20g00305 Cma-Chr20:1493472 0 dispersed
Cma20g00305 Cma-Chr20:1493472 Cma14g00501 Cma-Chr14:2445850 3.11E-91 dispersed
Cma02g00678 Cma-Chr2:4161597 Cma20g00305 Cma-Chr20:1493472 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00305 K00487 - csv:101221846 942.184