Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00307 ATGCAGGATCCAGCGCCATCAAACCCTATCCACAGTCCAAATTCGAATCAAATTCCTCCACTCAATGCTGCACTGCCGCCGCCGCCGGCTCACAAACCGCCGCCGGTGGCGAATGCGACGGCCTCCTCGTCGATGTTTGCGAATGCGAATGCCGGCAATGGCTCATTCGTGCCTAGAGCGGGGTCTCATCATCGGAGGGCTCATTCGGAAGTTAGCTTCCGGTTGCAGGAGGACATGATGGATATATCCGCGTCGGATCCGTTCAACGGCGGTTCGTCGACGGCCAGTCTGGAGGAGATCGGATCGGAGGATGATCTATTTTCGACCTACATTGATGTGAAGAAGTTTGGAGGTAATGGAGGAGGAAATTTCGTGGATCATGATGCCAATGGTGGAAGTGAAGGCGCTGGTGGTAATGAGGGAGAGAAGACTTCGAAGCCAAGGCATCGGCATAGCGTTTCGGTGGACGGAACGACGTCGTCGTCGAGCATGTTTGGGGAGATTATGGAAGCGAAGAAAGCCATGCCTCCTGATAAGTTGGCTGAGCTTTGGAGCAGTGATCCCAAGCGCGCCAAAAGGATATTGGCAAATCGACAGTCTGCTGCTCGCTCAAAAGAGAGGAAGGCACGATATATACAAGAGTTGGAGCGCAAAGTGCAAACCCTTCAAACGGAAGCAACTACTCTATCAGCCCAATTGACTCTCTTCCAGCGAGACACAACGGGTCTCAGTACTGAGAATACAGAGCTTAAGCTTCGTTTGCAGGCTATGGAGCAACAAGCCCAAATGCGTGATGCTTTGAACGAAGCATTGAAGAAGGAAGTTGAGAGGCTTAAAATTGCTACTGGAGAAATGATGAGCCCTTCCGAGTCTTTTAACTTGGGAATGCATCACATGGCATACGCCCCATCGTCTTTCATTCAACTTTCACAGCAACCAGGGTCTGCTGGCCCTCAAAACATTCAAATGCCACCATATAACCATTCCCCATCCAACATGTCTAGCCACCCTCTGCATCCATCAGACTCTCATTCTCTCTCGGAGGTGCTACAAAGCGACCCTCTTGGTCGATTACAGGGTCTCGATATCAGTAGTAAAGGATCGTCGCTTGTGAAATCCGAGGACCCTTCTCTCTCCGCTAGTGAGAGCAGTACAACCTTTTGA 1164 51.03 MQDPAPSNPIHSPNSNQIPPLNAALPPPPAHKPPPVANATASSSMFANANAGNGSFVPRAGSHHRRAHSEVSFRLQEDMMDISASDPFNGGSSTASLEEIGSEDDLFSTYIDVKKFGGNGGGNFVDHDANGGSEGAGGNEGEKTSKPRHRHSVSVDGTTSSSSMFGEIMEAKKAMPPDKLAELWSSDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQAMEQQAQMRDALNEALKKEVERLKIATGEMMSPSESFNLGMHHMAYAPSSFIQLSQQPGSAGPQNIQMPPYNHSPSNMSSHPLHPSDSHSLSEVLQSDPLGRLQGLDISSKGSSLVKSEDPSLSASESSTTF 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1509757 1513523 + CmaCh20G003070.1 Cma20g00307 316121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00307 387 MobiDBLite consensus disorder prediction 309 352 - -
Cma20g00307 387 Gene3D - 188 241 - -
Cma20g00307 387 Coils Coil 254 284 - -
Cma20g00307 387 MobiDBLite consensus disorder prediction 37 51 - -
Cma20g00307 387 PANTHER ATBZIP TRANSCRIPTION FACTOR 4 384 - -
Cma20g00307 387 Coils Coil 205 232 - -
Cma20g00307 387 Pfam bZIP transcription factor 189 237 IPR004827 GO:0003700|GO:0006355
Cma20g00307 387 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 4 384 - -
Cma20g00307 387 MobiDBLite consensus disorder prediction 362 387 - -
Cma20g00307 387 MobiDBLite consensus disorder prediction 1 19 - -
Cma20g00307 387 MobiDBLite consensus disorder prediction 20 35 - -
Cma20g00307 387 MobiDBLite consensus disorder prediction 1 73 - -
Cma20g00307 387 MobiDBLite consensus disorder prediction 124 161 - -
Cma20g00307 387 MobiDBLite consensus disorder prediction 309 387 - -
Cma20g00307 387 CDD bZIP_plant_RF2 190 239 IPR044759 GO:0003700|GO:0006355
Cma20g00307 387 SUPERFAMILY Leucine zipper domain 189 240 IPR046347 GO:0003700|GO:0006355
Cma20g00307 387 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 250 IPR004827 GO:0003700|GO:0006355
Cma20g00307 387 SMART brlzneu 185 249 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00732 Cma20g00307 CCT
Cma02g00696 Cma20g00307 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00106 Cma-Chr4:521220 Cma20g00307 Cma-Chr20:1509757 5.52E-113 dispersed
Cma04g01066 Cma-Chr4:5497333 Cma20g00307 Cma-Chr20:1509757 2.15E-100 dispersed
Cma09g01082 Cma-Chr9:5779135 Cma20g00307 Cma-Chr20:1509757 9.38E-61 dispersed
Cma14g01518 Cma-Chr14:11486420 Cma20g00307 Cma-Chr20:1509757 9.41E-55 dispersed
Cma19g00704 Cma-Chr19:7204892 Cma20g00307 Cma-Chr20:1509757 8.23E-52 dispersed
Cma01g00732 Cma-Chr1:3846794 Cma20g00307 Cma-Chr20:1509757 7.05E-154 transposed
Cma01g01000 Cma-Chr1:7248649 Cma20g00307 Cma-Chr20:1509757 3.97E-53 transposed
Cma04g02444 Cma-Chr4:16823509 Cma20g00307 Cma-Chr20:1509757 3.06E-62 transposed
Cma02g00696 Cma-Chr2:4250304 Cma20g00307 Cma-Chr20:1509757 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36984 PF00170 bZIP_1 1.40E-08 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00307 - - csv:101205663 605.52