Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cma20g00310	ATGGTTTTGAAGATCGGAAACTTCGAGACGTCGAGCACGGCGGTGGGGATGGGATGTATTATGCTTAGAATTGACTATTCCAGGCTTTTTTGGTTTCTCTCTGCCGCCTTCGCCGCCGCCACCACCACCACCACCGCTTTCGTTTGCCCTTTTTTGGGTTTTTTTTTTTCTTTTCTCGTTTTTGCCCTTTTATCTCTCTCTGTTATGCCCTTGATTTGTTCGTCGAACATGTTGAAGAACACTCGAAACAGCCCTGATTGGAACTCGGAATTTGGGTACGTTGAGACCGATCCGACATGTCGTTACGGCCGTTTTGAAGAAGTTCTGGGAAAAGGGGCTATGAAGACAGTGTACAAAGCCATTGATGAGTTTCTTGGAATTGAGGTGGCTTGGAGTCAGGTGAAACTCAATGAAGTTCTCCGGTCACCGGAGGATTTGCAGCGGTTGTATTCGGAAGTTCATCTACTTAGTACGCTTAAGCATGAATCGATCATGCGATTCTACACCTCTTGGATCGATGTCGAACGCAAAACCTTCAACTTCATTACTGAATTGTTTACTTCTGGAACGCTTAGAGAATATGTAAAGAAGTATAGGCGAGTCGATATCAGAGCCATTAAGAGCTGGGCGCGCCAGATTCTACGCGGGCTCGTTTATTTGCATGAACACGACCCTCCGATAATACACAGAGATTTGAAGTGCGATAATATCTTTGTAAACGGCCATCTTGGACAAGTCAAGATTGGTGACTTGGGGCTTGCAGCTATACTCCATGGTTCCAGATCTGCTCACAGTGTTATAGGCACACCGGAGTTTATGGCGCCGGAATTATACGAGGAAGATTACAACGAGCTGGTTGATGTCTACTCGTTCGGCATGTGTGTTCTGGAGATGCTTACTTCCGAGTACCCGTATAGCGAGTGTTCTAATCCCGCACAGATTTACAAGAAAGTCACGTCGGGGAAGCTGCCAACAGCATTGTACAAGATTCAAGACGCGGAAGCACAGAGATTTATTAAAAAATGTTTGGTACCGGTATCGATGAGGGCGTCTGCTAAGGAACTCTTGGCCGATCCGTTTCTGAAGGTTGATGGAGATAGACCTTTGTCGATCGAGAGGAATCAAAACCAGAAGCCATTTCTAAATGCCAAAGAGATGGAGAAATTGCACTTAGGTGAAGGTTTAAGCAGGACGAACATGACGATCACCGGGAAGCTGAACCCGGAAGACGATACACTCTTTCTCAGAGTTCAGATTGCTGATAAAGATGGCTCTCTTAGGAACATATACTTCCCCTTCGACATAGTTAACGACACAGCGTTAGACGTAGCAATGGAGATGGTGAAAGAATTGGAGATCTCCGATTGGGAGCCGTTTGAAATAGCGGACATGATCGAAGGAGAAATATCAGCTCTGGTTCCAAACTGGAATAGAAGCGAGTTACCCAACCATAGACTCGGATTCAGCTTTTCAGAAGAAGACGATGATGCAGCTCATCGTACTCTCCGCTCCATCTCCTCGTCGTCCCAAGCAACAACTTTGAGTCTCATCACCTCTCCTAAGACAAATCAAAACATATCAAATGGTTTAAGTTGGTTCCCAGATGAAACGCTCGACGATAGCAGCTCACAGTGCTCATCGGCGTCAGGAAAATACTCAAACTTGAATTACATCAGCAGCGACGAGTACGAGACCGGTATGAGTTCAGTCCGAGTAGATCAACATAACAACATCAATAAGATTCAAAACTCCTCAAGATTTTGTCCTGTTGAGAGCCGCAAAAACAAGGATTTCATGGCTGGGCTTCTATACAAGCAGTGCCAATGTGCGGTAGCAGGGTCATCTCAAGGAGCTACATCTGGTCGCAAAGACAAGAGGGGAACGGACGGCCGGACATTAACAAGGAACAGGTCACTAGTAGATGTACATAGCCAATTGCTGCATCGTTCGTTGGTCGAGGAAGTGAATAGAAGACGGTTATTCAAGACGGTTGGAGCGGTCGAAAGCATCGGGTTTCAAGCACCTTGTGAGGTTTCTTCCAGCAAAAGGGTTTCGAGTAGGCAACCGATCGGGAACCGAAGTAGCGATGTAGCGAGAACGAGGAGAAACGACGATATTAGGTGGGAAGTTGTCGGAAGGAGAACATGA	2148	46.28	MVLKIGNFETSSTAVGMGCIMLRIDYSRLFWFLSAAFAAATTTTTAFVCPFLGFFFSFLVFALLSLSVMPLICSSNMLKNTRNSPDWNSEFGYVETDPTCRYGRFEEVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPEDLQRLYSEVHLLSTLKHESIMRFYTSWIDVERKTFNFITELFTSGTLREYVKKYRRVDIRAIKSWARQILRGLVYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEEDYNELVDVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPTALYKIQDAEAQRFIKKCLVPVSMRASAKELLADPFLKVDGDRPLSIERNQNQKPFLNAKEMEKLHLGEGLSRTNMTITGKLNPEDDTLFLRVQIADKDGSLRNIYFPFDIVNDTALDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELPNHRLGFSFSEEDDDAAHRTLRSISSSSQATTLSLITSPKTNQNISNGLSWFPDETLDDSSSQCSSASGKYSNLNYISSDEYETGMSSVRVDQHNNINKIQNSSRFCPVESRKNKDFMAGLLYKQCQCAVAGSSQGATSGRKDKRGTDGRTLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSSKRVSSRQPIGNRSSDVARTRRNDDIRWEVVGRRT	715

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
20	1534263	1537920	+	CmaCh20G003100.1	Cma20g00310	316124

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cma20g00310	715	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED	87	695	-	-
	Cma20g00310	715	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	227	239	IPR008271	GO:0004672\|GO:0006468
	Cma20g00310	715	Gene3D	Phosphorylase Kinase; domain 1	87	184	-	-
	Cma20g00310	715	ProSiteProfiles	Protein kinase domain profile.	103	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cma20g00310	715	CDD	STKc_WNK	101	361	-	-
	Cma20g00310	715	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	87	695	-	-
	Cma20g00310	715	Pfam	Protein kinase domain	106	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cma20g00310	715	Gene3D	Transferase(Phosphotransferase) domain 1	186	366	-	-
	Cma20g00310	715	SUPERFAMILY	Protein kinase-like (PK-like)	105	362	IPR011009	-
	Cma20g00310	715	SMART	serkin_6	103	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cma02g00698	Cma20g00310	CST

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cma18g00193	Cma-Chr18:1004778	Cma20g00310	Cma-Chr20:1534263	5.91E-162	dispersed
	Cma03g00297	Cma-Chr3:3865243	Cma20g00310	Cma-Chr20:1534263	0	transposed
	Cma02g00698	Cma-Chr2:4262282	Cma20g00310	Cma-Chr20:1534263	0	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	69377	PF00069	Pkinase	5.50E-48	CL0016	Cma	PK

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cma20g00310	K08867		-	csv:101203757	1152.89