Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00311 ATGCCGGAGATCGAACCCTCTCCCCCCGATAACGATGCCTTATTTGGCAGGTATGAGCTCGGCAAGCTCCTTGGCTGCGGCGCCTTTGCCAAGGTCTACCATGCCCGCGACCTCCATTCCGGCCAAAGCGTCGCCATCAAAGTCATCAACAAGAAGAAGATCAACGGCTCAATCCTAATGCTCAACATCAAGCGGGAGATCACCATCATGCGCCATCTCCGCCACCCTCACATCGTCAAACTCCTTGAGATCCTCGCTACCAAATCCAAGATCTACTTCGTCATGGAGTTCGTCAGAGGCGGTGAACTCTTCGCTAAGATCGCCATTGGCAGGTTCAGCGAGAATCTCAGCCGGAAATTCTTCCGCCAGCTGATCTCCGCCGTTGGATTCTGTCACGCGCGTGGGATCTACCACCGCGATTTGAAGCCGGAGAATCTCCTCGTCGATGAGAATGCGAATCTGAAGGTCTCCGACTTCGGTCTCAGTGCGGTTACGGATCAGATCCGCGCCGATGGCCTTTTGCATACTCTCTGTGGAACTCCGGCGTATGTCGCGCCGGAGATTTTATCGAAGAAGGGATACGACGGTGCGAAAATCGATGTGTGGTCATGTGGTGTGACTCTCTTCGTGTTGAACGCCGGTTACCTTCCGTTCAACGATTCGAATCTAATGGTGTTGTATAAGAAGATTTACAGGGGGGATTATCGGTGCCCTAAATGGATGTCGCCTGATCTCCAGAGGTTTCTGTCACGACTTCTCGATACGAATCCCCAAACCAGGATCACCATCAATGAGATTCTGAATGATCCGTGGTTCACAAATGGAGGAGATACAGACATCAATTTCTACGATGATTACGAGGTCAAATCGGAAGCGAAGGTCGAATCTCCATCGAAGAACTTAAACGCATTCGACATTATATCGTTCTCGTCGGGATTAGATCTGTCTGGTTTGTTCGACGATTCGCAATACGCAGTGGAGGACAGTGACCGATTCGTACTGGCGGAGTCGCCGGAAAAGATCCTGGAAGAAGTGGAGGAATTCGCTAGGTCTGAGAATTTGAAGGTTAAGAAACAGAGAGAATTTTTAGTTGAATTGTTTGGACAGAATCATAATTTTTCTATCCGGATAGAAATTTTCCGGTTGATCGACGGATTGGCGGTGGTGGAGGTGAGAAGAAGAGGTGTCGATGCAGGATCATACAAGCAACTGTTGAAGAAAAAGCTGAAATGTCATCTCATCGAAAACGTAGCGTCGGCGTCCCGATAG 1269 49.65 MPEIEPSPPDNDALFGRYELGKLLGCGAFAKVYHARDLHSGQSVAIKVINKKKINGSILMLNIKREITIMRHLRHPHIVKLLEILATKSKIYFVMEFVRGGELFAKIAIGRFSENLSRKFFRQLISAVGFCHARGIYHRDLKPENLLVDENANLKVSDFGLSAVTDQIRADGLLHTLCGTPAYVAPEILSKKGYDGAKIDVWSCGVTLFVLNAGYLPFNDSNLMVLYKKIYRGDYRCPKWMSPDLQRFLSRLLDTNPQTRITINEILNDPWFTNGGDTDINFYDDYEVKSEAKVESPSKNLNAFDIISFSSGLDLSGLFDDSQYAVEDSDRFVLAESPEKILEEVEEFARSENLKVKKQREFLVELFGQNHNFSIRIEIFRLIDGLAVVEVRRRGVDAGSYKQLLKKKLKCHLIENVASASR 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1543218 1544486 + CmaCh20G003110.1 Cma20g00311 316125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00311 422 Gene3D Kinase associated domain 1, KA1 297 418 - -
Cma20g00311 422 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165
Cma20g00311 422 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00311 422 SUPERFAMILY Protein kinase-like (PK-like) 15 281 IPR011009 -
Cma20g00311 422 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
Cma20g00311 422 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Cma20g00311 422 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00311 422 Pfam NAF domain 299 358 IPR004041 GO:0007165
Cma20g00311 422 CDD CIPK_C 302 401 - -
Cma20g00311 422 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00311 422 PANTHER - 9 417 - -
Cma20g00311 422 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 9 417 - -
Cma20g00311 422 Gene3D Phosphorylase Kinase; domain 1 9 97 - -
Cma20g00311 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00704 Cma20g00311 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00300 Cma-Chr3:3897272 Cma20g00311 Cma-Chr20:1543218 1.67E-178 dispersed
Cma07g01228 Cma-Chr7:6767854 Cma20g00311 Cma-Chr20:1543218 2.76E-180 dispersed
Cma20g00311 Cma-Chr20:1543218 Cma07g00182 Cma-Chr7:871594 1.29E-161 dispersed
Cma02g00704 Cma-Chr2:4273796 Cma20g00311 Cma-Chr20:1543218 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69378 PF00069 Pkinase 2.30E-70 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00311 - K12761 cmos:111448499 766.533