Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00312 ATGCGCACTAAAATGGTGGCTCCCAGTAGGAAACTACGAAGCATTTGCATACCCGTATTGCTCTCTGTAACTCTGCTCGTAATTTCGATCCTCATTTTAGCCTTTACTGCTTTCAAGCCCAAGCGGCCCACCATCGCCGTCGATTCAGTTTCTCTGCTCGATCTGAACATTTCTCTGGACGCCGCCAGGCTGAGCGTCGATCTGAATTTGTTTCTCTTGCTCGATCTCTCCGTTGAGAATCCGAATAAGGTAGCCTTCGAATACTCCTATAGCACCGCCGTCGTGAGTTACAGAGGCGAAGAACTCGGAGAAGTGCCGATTCCGGCCGGTCGGTTGCTGGCCGACAGGACTGAGAAAATGAACCTAACATTAAAGATGATGGCTGACCGGCTCCTCGCTAAGTCGGAGCTATTCTCCGACGCGATGTCTGGTGAAGTCCCGATCAACATTTTCACCCGATTGTCCGGGATTGTGAAGGTGATCGGCGTTTTCAAGATTCATGTTGTAGCCTCGTCGTCTTGTGATCTCACCATCGGCATTGGAAACAGAAATGCTTATGGTGGAAATGCGCAGCGCGTGAACGGTCTAATGACGTATTCCTCGAACCGCTTTCCACAGGATTGGCTTAAGGAGGGAGGCCAGGGAGCTCTTGCTGAGCCATCCGGCTTTCGGCAGAAGAGTGGGCTGTGGTGGTTGATCTTCATTAAAGAGAAACTAGTGGTGCTCCAATTCTCTGGATTTGATTTATTGGGATGGAAAATAAGGCTAGGAAGATTGCCAGGCCAAGGAACCTTTGCTAAGGTATATTATGCGCGGAATACAGTAAACAACCAAAGCGTGGCCATTAAGGTGATCGATAAAGGAAAGATTACGAAGGCTACGCTAATTGATCAGATTAAGCGTGAAATATCTATTATGAGACTTGTTAGACATCCTAATATTGTATATCTGTATGAGGTTATGGCTACCAAGACTAAGATTTACTTTGTTTTGGAATATGCAAAAGGTGGTGAGCTCTTTGACAGAGTTGCTAAAGGGAGGCTGAATGAGGATGATGCTTGGAAATACTTTTATCAATTAATCCATGCTATTGATTTTTGTCACAGCAGGGGAGTATATCACCCTGACATAAAGCCTGAGAACTTACTGCTTGATGAAAATGAAAATCTTAAGGTGTCTGATTTTGGTTTAAGGGCTCTAGCCGAGTCCGAGTGTCGAGATGGGTTGCTACACACGATTTGTGGCACACCGGCTTATGTTGCCCCTGAAGTTATAAATAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTCGTTTTATTTGTCTTATTGGCAGGTTATCTCCCGTTCCACAACTCGAATCGATTTAATGGAGATGTATAG 1395 45.73 MRTKMVAPSRKLRSICIPVLLSVTLLVISILILAFTAFKPKRPTIAVDSVSLLDLNISLDAARLSVDLNLFLLLDLSVENPNKVAFEYSYSTAVVSYRGEELGEVPIPAGRLLADRTEKMNLTLKMMADRLLAKSELFSDAMSGEVPINIFTRLSGIVKVIGVFKIHVVASSSCDLTIGIGNRNAYGGNAQRVNGLMTYSSNRFPQDWLKEGGQGALAEPSGFRQKSGLWWLIFIKEKLVVLQFSGFDLLGWKIRLGRLPGQGTFAKVYYARNTVNNQSVAIKVIDKGKITKATLIDQIKREISIMRLVRHPNIVYLYEVMATKTKIYFVLEYAKGGELFDRVAKGRLNEDDAWKYFYQLIHAIDFCHSRGVYHPDIKPENLLLDENENLKVSDFGLRALAESECRDGLLHTICGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHNSNRFNGDV 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1546301 1549450 - CmaCh20G003120.1 Cma20g00312 316126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00312 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 372 384 IPR008271 GO:0004672|GO:0006468
Cma20g00312 464 Gene3D Transferase(Phosphotransferase) domain 1 250 461 - -
Cma20g00312 464 SUPERFAMILY LEA14-like 26 131 - -
Cma20g00312 464 Pfam Late embryogenesis abundant protein 76 168 IPR004864 -
Cma20g00312 464 SMART serkin_6 254 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00312 464 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 253 459 - -
Cma20g00312 464 Gene3D - 32 178 - -
Cma20g00312 464 PANTHER - 253 459 - -
Cma20g00312 464 ProSiteProfiles Protein kinase domain profile. 254 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00312 464 SUPERFAMILY Protein kinase-like (PK-like) 256 459 IPR011009 -
Cma20g00312 464 Pfam Protein kinase domain 261 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00312 Cma-Chr20:1546301 Cma07g01230 Cma-Chr7:6791652 9.00E-112 dispersed
Cma04g00681 Cma-Chr4:3465559 Cma20g00312 Cma-Chr20:1546301 4.55E-15 transposed
Cma02g00706 Cma-Chr2:4277266 Cma20g00312 Cma-Chr20:1546301 5.63E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69379 PF00069 Pkinase 3.70E-63 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00312 - - csv:101206404 362.073