Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00313 ATGGGTATCACCACTTCTCATACCCCAAAAAATGTAGTGAGTTTTGTCTTAGCTTTGCAGCTGGTCTTCCTTTTGATGGGCAGCTCCTCAGCCCAGCTCTCCACTTCCTTCTACTCCAAGACCTGTCCCAAGCTCCTCCCAATCGTCCGCTCGGGCGTCCAATCCGCCATCGCTAAGGAAACCCGCATGGGCGCTTCCCTTCTCCGTCTCCACTTCCATGACTGCTTTGTTAACGGATGTGACGGGTCAATTCTTTTAGACGATACTGCCACTTTTAGAGGAGAGCAAACAGCTCCTCCAAATAATAGGTCTGTTCGAGGTTTTGACGTCATAAAAGCTATTAAGAGTAGCGTAGAAAAAGCTTGTCCTAGTGTTGTCTCTTGTGCTGATATTTTGACTCTTACTGCTCGTGATTCCGTCAACATTTTGGGAGGACCAACTTGGGAGGTGAAACTAGGACGTAGAGATTCGAAAACAGCTAGCTTCTCCGCCGCTAGCAGCGGTGTCATCCCTCCGCCTAGTTCAACCCTTGCTAACCTCATCAATCGATTCAGTGCTAAAGGCCTCTCTACTAAAGACATGGTTGTCTTGTCGGGCGCCCACACGATAGGTCTAGCAAGGTGCACTAGCTTCAAGAACCGTATATACAACGAGAGCAACATTGACGCTTCATTTGCAAAGCTAAGACAACGCAGTTGTCCGAGAAGTGGAGGAGATGACAATCTTGCCCCTCTAGATGTTGCAACGCCAAAGCTTTTTGATAACTATTACTACAAGAACCTTGTGAACCAAAAGGGCTTACTCCACTCCGACCAGGTCCTCCACAACGGCGGTTCCACCGATTCCTTGGTAGAACAATACAGTAAAAACGATAAGATTTTCGATGCCGATTTCGTAACTGCAATGATTAAAATGGGAGACATTCAACCGCTCACCGGATCTCAGGGCGAGATCAGGAAGGTCTGCAGCAAACCCAACTAA 981 47.81 MGITTSHTPKNVVSFVLALQLVFLLMGSSSAQLSTSFYSKTCPKLLPIVRSGVQSAIAKETRMGASLLRLHFHDCFVNGCDGSILLDDTATFRGEQTAPPNNRSVRGFDVIKAIKSSVEKACPSVVSCADILTLTARDSVNILGGPTWEVKLGRRDSKTASFSAASSGVIPPPSSTLANLINRFSAKGLSTKDMVVLSGAHTIGLARCTSFKNRIYNESNIDASFAKLRQRSCPRSGGDDNLAPLDVATPKLFDNYYYKNLVNQKGLLHSDQVLHNGGSTDSLVEQYSKNDKIFDADFVTAMIKMGDIQPLTGSQGEIRKVCSKPN 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1550512 1551944 - CmaCh20G003130.1 Cma20g00313 316127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00313 326 ProSiteProfiles Plant heme peroxidase family profile. 32 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601
Cma20g00313 326 Gene3D - 37 323 - -
Cma20g00313 326 CDD secretory_peroxidase 32 324 IPR033905 GO:0004601|GO:0042744
Cma20g00313 326 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 PRINTS Plant peroxidase signature 192 204 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 SUPERFAMILY Heme-dependent peroxidases 32 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 Gene3D Peroxidase, domain 2 171 305 - -
Cma20g00313 326 Pfam Peroxidase 49 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
Cma20g00313 326 PANTHER PEROXIDASE 15 324 - -
Cma20g00313 326 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00313 326 PANTHER PEROXIDASE 72-RELATED 15 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00721 Cma20g00313 CCT
Cma02g00707 Cma20g00313 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00721 Cma-Chr1:3796278 Cma20g00313 Cma-Chr20:1550512 3.77E-145 dispersed
Cma08g01288 Cma-Chr8:7797609 Cma20g00313 Cma-Chr20:1550512 3.20E-97 dispersed
Cma15g00156 Cma-Chr15:723795 Cma20g00313 Cma-Chr20:1550512 2.45E-120 dispersed
Cma16g00634 Cma-Chr16:3271830 Cma20g00313 Cma-Chr20:1550512 1.24E-108 dispersed
Cma20g00313 Cma-Chr20:1550512 Cma19g01015 Cma-Chr19:8715805 1.57E-120 dispersed
Cma20g00313 Cma-Chr20:1550512 Cma20g00314 Cma-Chr20:1557538 4.96E-176 tandem
Cma02g00439 Cma-Chr2:2235723 Cma20g00313 Cma-Chr20:1550512 8.07E-96 transposed
Cma03g00990 Cma-Chr3:6983239 Cma20g00313 Cma-Chr20:1550512 2.57E-108 transposed
Cma02g00707 Cma-Chr2:4281800 Cma20g00313 Cma-Chr20:1550512 9.09E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00313 K00430 - csv:101207371 563.918