Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00314 ATGGCGATTGCATCCCTTTCTCGTCCCAACAAAATGGTTGTGGCTTTAGCATTAGCCTTATTCGTCGTGTTTATGGGGAACTCCTCGGCTCATCTCTCTCCCGATTTCTACTACAAGAGCTGCCCCAAGCTCCTTAGCACTGTCCGAGCTGGTGTTCTGTCTGCCGTGGCTAAGGAACCTCGCATGGGCGCTTCCCTTCTCCGCCTCCACTTTCATGACTGCTTCGTTAACGGTTGCGATGGATCGATTCTTCTGGAAGATACTCCTACGTTCACGGGAGAGCAAACTGCAGCTCCCAATAATAGATCCGTTAGAGGGTTCAATGTAATTGAGAGTATAAAGAAAAATGTTGAAAAAGTTTGTCCTGGTGTTGTCTCTTGTGCTGATATTTTGACTCTTTCTGCTCGTGACTCTGTCGTGGCTCTGGGAGGACCAAGTTGGAAGGTTAAATTAGGGAGAAGAGATTCCAAAACAGCCAGCTTCTCTGATGTCGTTGGTGCCATTCCTCCTCCAACTTCCACCCTCAACACCCTCATCAACCGATTCAACACTAAGGGTCTCTCCCCTCGAGACTTGGTTGCCTTATCTGGGGCCCACACCATTGGACAAGCTCGGTGTTTGTTTTTCAAGAATCGTATATACAACGAGACCAACATCGACGAGTCATTTGCTAAAGAGAGGCAAAGAAACTGCCCAAGAAATGGAGGAGACGACAATCGTGCCCCTTTGGACTTTAGAACCCCAAAGCTTTTCGATAACTACTACTACAAGAACCTTTTGGAGAAGAAGGCTTTGCTCCGCTCCGATCAAGTGCTCCACGACGGTGGATCCACTGATTCCTTGGTTGAACTCTATGGTGATGACAGTGATGCCTTTGAGTCTGACTTCGTGACGGCTATGATCAAGATGGGCGACATTCAGCCACTCACTGGATCGCAAGGCCAGATCCGAAAGGTCTGCAGCCGACCCAATTGA 975 48.62 MAIASLSRPNKMVVALALALFVVFMGNSSAHLSPDFYYKSCPKLLSTVRAGVLSAVAKEPRMGASLLRLHFHDCFVNGCDGSILLEDTPTFTGEQTAAPNNRSVRGFNVIESIKKNVEKVCPGVVSCADILTLSARDSVVALGGPSWKVKLGRRDSKTASFSDVVGAIPPPTSTLNTLINRFNTKGLSPRDLVALSGAHTIGQARCLFFKNRIYNETNIDESFAKERQRNCPRNGGDDNRAPLDFRTPKLFDNYYYKNLLEKKALLRSDQVLHDGGSTDSLVELYGDDSDAFESDFVTAMIKMGDIQPLTGSQGQIRKVCSRPN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1557538 1559008 - CmaCh20G003140.1 Cma20g00314 316128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00314 324 CDD secretory_peroxidase 31 322 IPR033905 GO:0004601|GO:0042744
Cma20g00314 324 Pfam Peroxidase 51 287 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Cma20g00314 324 PANTHER PEROXIDASE 72-RELATED 12 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 Gene3D - 35 321 - -
Cma20g00314 324 PANTHER PEROXIDASE 12 321 - -
Cma20g00314 324 Gene3D Peroxidase, domain 2 169 303 - -
Cma20g00314 324 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
Cma20g00314 324 SUPERFAMILY Heme-dependent peroxidases 32 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma20g00314 324 ProSiteProfiles Plant heme peroxidase family profile. 31 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00720 Cma20g00314 CCT
Cma01g00720 Cma20g00314 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00720 Cma-Chr1:3790072 Cma20g00314 Cma-Chr20:1557538 5.68E-123 dispersed
Cma02g00707 Cma-Chr2:4281800 Cma20g00314 Cma-Chr20:1557538 6.74E-177 dispersed
Cma11g01773 Cma-Chr11:11854472 Cma20g00314 Cma-Chr20:1557538 7.56E-56 dispersed
Cma20g00314 Cma-Chr20:1557538 Cma19g01015 Cma-Chr19:8715805 1.33E-116 dispersed
Cma20g00314 Cma-Chr20:1557538 Cma20g00316 Cma-Chr20:1564987 8.78E-115 proximal
Cma20g00313 Cma-Chr20:1550512 Cma20g00314 Cma-Chr20:1557538 4.96E-176 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00314 K00430 - csv:101204245 577.785