Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00316 ATGGCGGCCCTTCGCTCTCTTTTTCTCTGTGTTTTTGTTTTATCAGCTGCCCTAAGCCATAGCCATGCACAGCTGACTCCCAACTTTTACAACAAAGTCTGCCCCAAGGCCTTGTCCACCATTAGATCCGTCGTCTTGAACGCCATCAAACGTGAGCCTCGTATGGGAGCTTCCCTCTTACGTCTCCATTTCCACGATTGCTTCGTCAACGGTTGCGATGGGTCGGTCTTATTGGACGATATTGGTAACTTCGTTGGAGAAAAGACTGCCTTTCCTAATATAAACTCGATCAGAGGATTTGAAGTCGTCGACCAGATTAAACAAAAAGTCAACAAGGCTTGTAAAGGCAATGTTGTGTCTTGTGCTGATATCTTAGCTGTTGCTGCTCGTGATTCGGTTGCTATTCTTGGTGGGCCAAACTACAAAGTACTATTAGGAAGAAGAGATGCAAGAACAGCAAGCGTAGACGATGCCAACAGAAGCCTCCCTCCGCCATTTTTCAGTTTCTCACAGCTTCTATCCAGCTTCCAATCTCAAGGCCTCGACCTCAAGGACCTCATCCTCTTATCGGCCGGCCACACCCTCGGCAAAGCTCGGTGCGCCACCTTCCGAACAAGGATATACAACGACACCAATATCGACCGGAAATTCGCAGCGTCGCTGAAGGCAATTTGCCCACCAAGCGGCAAGGATAACAATCTGATGGGTCTTGACAAGTCTTCCAATTTCTTTGACAATGCCTACTTCAAAGCTTTGTTGAATAAGAAGGGTCTTCTCCATTCCGACCAGGAACTGTTCGGCGGCGGGAGCCAGAAGAGTGATGAATTGGTGTCGTACTATAGCAGTTATCCATACTCCTTTAGAGATGACTTTGGTTCTTCCATGATCAAAATGGGCAATATAAAGCCACTTACAGGAAGTTATGGAGAAATCAGACAAAATTGTCGGTTTGTCAACTAA 960 46.67 MAALRSLFLCVFVLSAALSHSHAQLTPNFYNKVCPKALSTIRSVVLNAIKREPRMGASLLRLHFHDCFVNGCDGSVLLDDIGNFVGEKTAFPNINSIRGFEVVDQIKQKVNKACKGNVVSCADILAVAARDSVAILGGPNYKVLLGRRDARTASVDDANRSLPPPFFSFSQLLSSFQSQGLDLKDLILLSAGHTLGKARCATFRTRIYNDTNIDRKFAASLKAICPPSGKDNNLMGLDKSSNFFDNAYFKALLNKKGLLHSDQELFGGGSQKSDELVSYYSSYPYSFRDDFGSSMIKMGNIKPLTGSYGEIRQNCRFVN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1564987 1566321 + CmaCh20G003160.1 Cma20g00316 316130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00316 319 CDD secretory_peroxidase 24 318 IPR033905 GO:0004601|GO:0042744
Cma20g00316 319 SUPERFAMILY Heme-dependent peroxidases 24 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 ProSiteProfiles Plant heme peroxidase family profile. 24 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 Gene3D - 28 316 - -
Cma20g00316 319 Pfam Peroxidase 42 269 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 Gene3D Peroxidase, domain 2 163 298 - -
Cma20g00316 319 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Cma20g00316 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Cma20g00316 319 PANTHER PEROXIDASE 72-RELATED 7 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00316 319 PANTHER CATIONIC PEROXIDASE 7 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00316 Cma-Chr20:1564987 Cma19g01015 Cma-Chr19:8715805 1.13E-115 dispersed
Cma20g00314 Cma-Chr20:1557538 Cma20g00316 Cma-Chr20:1564987 8.78E-115 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00316 K00430 - csv:101204979 494.582