Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00327 ATGGCCACCGAGGCGACCGAAGCCTCGGCTAAGTTGAAGAGTCCGGATTTTCGCCCGGTACCGTCGCCTCCAGATTTTCATCCCGAGATTGTGGTCTCAGCTCATGATGGTCTCCGGTTCTGGCAGTTCATGATTGCTGGTTCAATCGCTGGGTCTGTTGAGCATATGGCTATGTTTCCGGTTGATACAGTCAAGACCCATATGCAAGCCCTTGGTTCTTGTCCAATTAAATCTGTTGGAGTTCGACAAGCGCTTCGGTCAATTTTGAAGACAGAGGGACCTGCTGGTTTTTATCGTGGTATTGGTGCTATGGGTCTTGGAGCTGGACCTGCACATGCTGTGTATTTTACAGTCTACGAGGATTGTAAGAAGTTTTTCTCTGGTGGGGATCCTAATAATTCTGTCGCCCACGCTGCTTCTGGCGTCTGTGCAACGGTGGCGAGTGACGCTGTTTTTACACCGATGGATATGGTTAAACAGAGGCTGCAGCTGAGTAATAGTCCCTACAAGGGGGTTTTGGATTGTGTCACAAGGGTCCTCAGAGACGAGGGGTTTAAAGCATTTTACGCATCATATAGAACTACAGTGTTAATGAATGCTCCATTTACTGCTGTGCATTTTGCTACTTATGAAGCTGCAAAGAGAGGTTTGCTGGAGGTTTCTCCAGACATTGTAAATAATGAACAGTGGATCGTTCATGCGACGGCAGGAGCTGCTGCTGGAGCCTCAGCTGCATTTGTTACAACGCCGCTTGATGTGGGTGTATGTGGCTGCGATAGATTCAAAAGCGGGTCGATAGAAGACGTCGTTAGGACAATACTCAAGAAGGACGGATATCGAGGGCTTATGAGGGGATGGGTTCCAAGGATGCTCTTTCACGCTCCGGCTGCTGCTATTTGCTGGTCGACATACGAAGCGATAAAATCTCTCTTCCAAGAGCTCAATGGAAGCAGTGACGAAATGACATGA 969 48.5 MATEATEASAKLKSPDFRPVPSPPDFHPEIVVSAHDGLRFWQFMIAGSIAGSVEHMAMFPVDTVKTHMQALGSCPIKSVGVRQALRSILKTEGPAGFYRGIGAMGLGAGPAHAVYFTVYEDCKKFFSGGDPNNSVAHAASGVCATVASDAVFTPMDMVKQRLQLSNSPYKGVLDCVTRVLRDEGFKAFYASYRTTVLMNAPFTAVHFATYEAAKRGLLEVSPDIVNNEQWIVHATAGAAAGASAAFVTTPLDVGVCGCDRFKSGSIEDVVRTILKKDGYRGLMRGWVPRMLFHAPAAAICWSTYEAIKSLFQELNGSSDEMT 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1604747 1608389 - CmaCh20G003270.1 Cma20g00327 316141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00327 322 Pfam Mitochondrial carrier protein 229 313 IPR018108 -
Cma20g00327 322 Pfam Mitochondrial carrier protein 38 127 IPR018108 -
Cma20g00327 322 Pfam Mitochondrial carrier protein 133 218 IPR018108 -
Cma20g00327 322 PANTHER MITOFERRIN-1-RELATED 5 318 - -
Cma20g00327 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 216 IPR018108 -
Cma20g00327 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 310 IPR018108 -
Cma20g00327 322 SUPERFAMILY Mitochondrial carrier 36 306 IPR023395 -
Cma20g00327 322 Gene3D Mitochondrial carrier domain 25 166 IPR023395 -
Cma20g00327 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Cma20g00327 322 PANTHER MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED 5 318 - -
Cma20g00327 322 Gene3D Mitochondrial carrier domain 167 322 IPR023395 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00724 Cma20g00327 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00330 Cma-Chr3:4065207 Cma20g00327 Cma-Chr20:1604747 1.90E-147 dispersed
Cma07g01076 Cma-Chr7:5743713 Cma20g00327 Cma-Chr20:1604747 3.79E-140 dispersed
Cma20g00327 Cma-Chr20:1604747 Cma02g00594 Cma-Chr2:3509587 4.80E-38 dispersed
Cma04g01408 Cma-Chr4:7200150 Cma20g00327 Cma-Chr20:1604747 1.28E-07 transposed
Cma02g00724 Cma-Chr2:4396902 Cma20g00327 Cma-Chr20:1604747 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00327 K15113 - csv:101215924 593.964