Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00329 ATGAGGAGACGGCTCTCTACCTCCAGATTTCGTGGTATGCTTCCTTTCTCCATTTTGGTTCCGATTCGAGTCGGGAAAAATTATTGTGTATCATCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGCTGCACAAAGGACTGCATTTTTGCCCCATATTTCCCTCCGAATGACCCTCTCAAGTTCGCCATTGTTCATAAGATCTTTGGCACCAGCAATGTCAGAAAAATGTTGCAGAAGATCTCAGTTGATCAGAGAGCGAATACTGTGAATAGTATAGTATATGAAGCAAATGCTAGAATGCGAGATCCAGTATATGGATGGGTAGGAATAATCTCATTTCTGCAAAATCAAGTGTTCCAATTGGAAATGCAACTAGCAGAAGCACAGGCGGAGATCTTAAGCTTTCAAATGCAGCAACCAGTAGCTCCGATGACATTCTCGACGACCCGAATAGATCAAAGTTACATGTTTGAATATTCAAGTAAGTAA 492 43.09 MRRRLSTSRFRGMLPFSILVPIRVGKNYCVSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGTSNVRKMLQKISVDQRANTVNSIVYEANARMRDPVYGWVGIISFLQNQVFQLEMQLAEAQAEILSFQMQQPVAPMTFSTTRIDQSYMFEYSSK 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1612823 1614383 + CmaCh20G003290.1 Cma20g00329 316143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00329 163 Pfam Lateral organ boundaries (LOB) domain 33 130 IPR004883 -
Cma20g00329 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 31 153 - -
Cma20g00329 163 ProSiteProfiles LOB domain profile. 32 133 IPR004883 -
Cma20g00329 163 Coils Coil 112 132 - -
Cma20g00329 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 31 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00329 Cma-Chr20:1612823 Cma02g00024 Cma-Chr2:124732 2.35E-48 dispersed
Cma02g00725 Cma-Chr2:4403586 Cma20g00329 Cma-Chr20:1612823 1.69E-66 wgd
Cma20g00329 Cma-Chr20:1612823 Cma04g01102 Cma-Chr4:5668634 1.85E-56 wgd
Cma20g00329 Cma-Chr20:1612823 Cma04g00134 Cma-Chr4:631586 8.22E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36986 PF03195 LOB 8.30E-38 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00329 - - cmax:111484539 290.041