Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00342 ATGAACGGTGGATTTAAGCAAGGGAATTTGGGGGTTTGTTTATCTGTTTTGCTGGAATTTTCAGCTACAGATGACCTTATTGGGTTTAGGAGTGCTGTTGAGGAACATGGTTATGATATTGATGAGGCAAGCTTGTGGTATGGGAGAAGTATTGGTTCAAAGAAGATGAGATATGAAGAAAGGACTCCTCTAATGGTTGCAGCCATGTTTGGGAGCTTGAATGTTCTGTCGTATATCGTTCACCGTGGTTGTGTCGATGTTAATCGGGCTTGTGGCTCTGATGGCCCGACGGCGCTACATTGTGCTGTTGCTGGTGGTTCTGCTGTTTCGGATCAGGTTGTTGAACTCTTGCTTGATGCGTCGGCTGATGCGAGTGCTGTCGATGCGAATGGTAATCAGCCTGGTGACTTGATTGGTCGTGATTTTAGTTTAGCTTCGTATTCAAGGAGAAAGGTATTACAACAATTGCTCAATGGTTGGGAAGAAGATGGCCTTGGGTCGTCGGAGGCGATATTTTATGAGATGGAAACGCTGGAGCCGGTGGAGGCTTCGAGCTCTTGGGCTGCAAGAGATGGGATGGAGAAGAAAGAGTATCGAGTTGATCTCTCACTTCCTGATATCAAGAATGAAATGTATAGCACAGATGAGTTTAGGATGTATACTTTTAAGATCAAACCGTGTACGAGAGCTTACTCTCATGATTGGACGGAGTGTCCGTTTGTTCACCCCGGGGAGAACGCGAGGAGGCGGGATCTAAGGAAATACCATTACAGCTGCGTCCTGTGCCCGGAATTCAGAAAGGGAACATGTAGACAGGGCGATGCGTGTGAATATGCTCATGGAATTTTTGAATGTTGGCTTCATCCTGCTCAATACCGTACCCGTCTTTGCAAGGACGAAACTGGATGCACCCGAAAAGTTTGTTTCTTTGCTCACAAACCGGAAGAGCTCCGCCCCTTGTATGCTTCAACGGGTTCTGCTGTACCGTCACCGAGATCAATCTGTGGTTCTTCATTAGACATGGCGGCGATCCGCTCACTTACCCTCGGTTCTCCTTCAGCTTTGATGCCTTCTTCATCGACTCCTCCTTTAACTCCTCCTACTGGAGTTTCTTCTCCAATGGGTGGAACCATGTGGCAGACTCAACCTCCGACCTTGCAGCTTCCAGGTAGCAGGTTGAAGGCATATTTGAACGCAAGAGACGTGGATTTAGACGTCGAGTTACTTTGTCTCGAAAGTCAGCGTCATCGACAAAAGCAGTTGATCGATGAGATATCGTGTCTACCTTCCCCTTCCAGATGGAACAATGGCTTGTCAACCACTGCACCTTTTCCATCCCCAAGGAGTAGAAATGGGGAGTTGAATGGACTTGGAGGCATGAAGCCTACGAACCTCGAGGAGTTTTTCGGGTCGGTAGATCCCGCAATGTTGCCTCAATTACAAGGACTTTCACTGGATTCTATGGGAACTCAAGTACAATCACCTTCCGGGATTCAGATGCGCCAAAGCCTGAATCAGTCTTTCCTCTCGAGCTATGCTAACAGCATTGGCTCCCCACCTGCAAGGTCGTCTCAACCATCCGTGTCTGCTGCAGCTAACGTTCTAAGTCCCAGGGGTGCGCTTTTCACCAACCGTAGCCAGAGCTTCATCGAACAGAATGCCATGCCTTCGAACCTATCGGATTGGGGTTCGCCCAATGGAAAGCTAGACTGGGGAATTCATGGAGAAGAACTCATCAAGCTAAGGAAATCTGCATCATATGGGTTTCAAGGCAGTTCTCTGGCAACGCCCACAATGCACGCTACCGCTCCCGAACCAGACGTGTCCTGGGTTCAGTCCTTGGTGAAGGATACTTCGAGCGAGAACTCGGTGCAGTTGAGCATGGAGCAGCAGAAACAGCAGCTTTGGCATCTTGACAATAGCGATTTGAAGCAAATGTACATGGAACAAGAGCAGCTAGTTGCTTGA 1968 48.42 MNGGFKQGNLGVCLSVLLEFSATDDLIGFRSAVEEHGYDIDEASLWYGRSIGSKKMRYEERTPLMVAAMFGSLNVLSYIVHRGCVDVNRACGSDGPTALHCAVAGGSAVSDQVVELLLDASADASAVDANGNQPGDLIGRDFSLASYSRRKVLQQLLNGWEEDGLGSSEAIFYEMETLEPVEASSSWAARDGMEKKEYRVDLSLPDIKNEMYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDLRKYHYSCVLCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVPSPRSICGSSLDMAAIRSLTLGSPSALMPSSSTPPLTPPTGVSSPMGGTMWQTQPPTLQLPGSRLKAYLNARDVDLDVELLCLESQRHRQKQLIDEISCLPSPSRWNNGLSTTAPFPSPRSRNGELNGLGGMKPTNLEEFFGSVDPAMLPQLQGLSLDSMGTQVQSPSGIQMRQSLNQSFLSSYANSIGSPPARSSQPSVSAAANVLSPRGALFTNRSQSFIEQNAMPSNLSDWGSPNGKLDWGIHGEELIKLRKSASYGFQGSSLATPTMHATAPEPDVSWVQSLVKDTSSENSVQLSMEQQKQQLWHLDNSDLKQMYMEQEQLVA 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1682067 1684034 - CmaCh20G003420.1 Cma20g00342 316156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00342 655 ProSiteProfiles Ankyrin repeat profile. 94 129 IPR002110 GO:0005515
Cma20g00342 655 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 281 IPR000571 GO:0046872
Cma20g00342 655 Gene3D - 30 157 IPR036770 -
Cma20g00342 655 ProSiteProfiles Ankyrin repeat region circular profile. 94 128 - -
Cma20g00342 655 SMART c3hfinal6 291 314 IPR000571 GO:0046872
Cma20g00342 655 SMART c3hfinal6 256 282 IPR000571 GO:0046872
Cma20g00342 655 Pfam Ankyrin repeats (3 copies) 52 125 IPR002110 GO:0005515
Cma20g00342 655 Gene3D - 255 319 - -
Cma20g00342 655 ProSiteProfiles Zinc finger C3H1-type profile. 261 283 IPR000571 GO:0046872
Cma20g00342 655 PANTHER UNKEMPT FAMILY MEMBER 13 653 IPR045234 -
Cma20g00342 655 SUPERFAMILY Ankyrin repeat 35 136 IPR036770 -
Cma20g00342 655 SMART ANK_2a 59 89 IPR002110 GO:0005515
Cma20g00342 655 SMART ANK_2a 94 126 IPR002110 GO:0005515
Cma20g00342 655 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 13 653 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00741 Cma20g00342 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01003 Cma-Chr14:5270069 Cma20g00342 Cma-Chr20:1682067 2.24E-144 dispersed
Cma20g00342 Cma-Chr20:1682067 Cma10g00690 Cma-Chr10:3123164 2.55E-55 dispersed
Cma02g00741 Cma-Chr2:4498059 Cma20g00342 Cma-Chr20:1682067 0 wgd
Cma20g00342 Cma-Chr20:1682067 Cma04g01112 Cma-Chr4:5737546 0 wgd
Cma20g00342 Cma-Chr20:1682067 Cma04g00150 Cma-Chr4:731055 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36988 PF12796 Ank_2 6.60E-07 CL0465 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00342 - - csv:101213761 1033.86