Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00352 ATGCCAGCCATTACTCGAGGAAGTCATTGTAAGATTGAGAATGGAACGAAATTGGACGATGTCATGGTTGCGAGAGTGACTGATGCATCTGCTATGGAGAAAACTCCTCCCAAGCGGAAACTGAGATCCGGTGATGCGCAGAGACAACAAAGCCCTGTCTCTGAGCCGATGAATTGGAAATCGCCTCGTCGGTGTCTCAATTCAAGTCCAAAGAGCCCTCCACATAGCGATGGGAAAACGTTTAATGATGGCTTTCCTAAATTACATATGTCACCGATAAAATGCTTGTTCAAGAACCCCAGTGTCAAACCAGATTGGAATCCTAAAGATACCCAACATATAAAATCAGCAAAGGAAGCATTGCACGTATCGACAGCTCCAACTACAATCATGTGCCGCGAGGATGAACAGAGCAGAATCTTAAATTTCTGCAAGGCTTGTGTGGAGCAAGAAAAAGCTGGTAGTTTGTATGTTTGCGGGTGTCCAGGAACTGGCAAATCTTTGTCCATGGAAAAAGTGAAAGAGCAGTTGGCTGATTGGGTGAAAGAGTCAGGTCTTCAGCTGCCAGACATTTTGTCCATCAACTGCACTTCGTTAGCTAAGACGTCAGACATTTTCACTAAGATAATGGGGGAAGTCCAACCGCAAAAGAAAAGGAATGGCTCTTTAACACCCTTGCAACATCTTCAAAGCTTGTACTCCCAAAAGGCAGAGTCATCTTGCACGAAGATGATGTTGATAATTGCTGATGAATTGGATTATTTAATTACAAAGGATAAGGCAGTGCTACATAATCTATTCATGCTCACAACTTTCCCATTTTCAAGATGCATTTTGATAGGAATTGCAAATGCTATTGATTTAGCAGATCGTTTCCTTCCAAGACTTCAGGCATTGAATTGCAAACCTCCGGTCATAACTTATAGGGCTTATTCCAAGGAACAGATCCTCAAGATTCTTCATCAACGGTTAATTGTGCTTCCTTTCGTTGTCTTTCAGCCGCAAGCTCTGGAGCTCTGTGCTAGAAAAGTTGCAGCTGTATCTGGAGATATGAGAAAAGCTCTTTGTGTTTGCAGAAATGCCATTGACTTGTTAGAGGCGGAACATAAAGCATCCTCTAAGGAGGAAGACCATATAGCATGTGATGCTTCAGCACCTGAGATTGTTAAAAGTCGGGAGTCTCAGATTGTGAGGTTGGACCATATGGCTGTTGCCTTATCCAAGACTTTTAAATCACCAGCAGTGGAAACCATACAATCTCTTCCTCAGCATCAACAGATTATTTTATGCTCTGTTGTGAAACTCGTTCGTGGAGGAAAGAAGGATACAACCATAGGAGAGGTAAACAAATCATACGTAGACATCTGCAAATCAACACTAATTCCGCCAGTGGGAACCTTAGAACTTTCAAACATGTTCACAGTGCTAAACGACCAGGGGCTTCTCAAACTCGGCCAGTCTCGAGACGATAAGACGAGGCGAGTGTTGCTGAAAGTCGACGAAGCAGATGTCATGTTCGCATTACAGCGAGATGGTTGTGTATTTGAATCAGGGAATACGGTTCTTTCGAAATTGCCTTGCAGTAAATTAGGCGTCTCGATATGGAGTATAGATTGGTTGGTGCTGATGAACACCTTAGTTTCTGGCTTTTTCTCACCACTCAAGAGGCATAGAAAATCAATACAAACATTTCTCTGTCTCTCTCCCCTTCTCCCTCCGATTCCGTCGCGGCCGACGATCTCCGGTAGGATGGAGAGCCTGTGGCGAGCGGCGACTGGCCAAGATCCGAGTCCGGATGATTACAAAGGCGTTGAATTCTGGACCAGCCCCGAGCGCGCCGGCTGGCTCAACAAGCAGGGCGAATATCTCAAAACCTGGCGTCGCCGATGGTTCGTTCTGAAACAAGGTAAACTCTTCTGGTTTAAGGACTCTATCGTTACTCGTGCCTCCATTCCACGCGGCGTCATCCCTGTCAACACCTGCCTCACCGTCAAGGGCGCCGAGGATATCCTCCATAAGCCCTGCGCCTTCGAGCTCTCCACCACCGGTCATGACACTATGTACTTCATCGCTGAGTCGGAGCGCGAAAAGGAGGAGTGGATCAATTCGATCGGTCGCTCAATAGTTCAGAATTCTCGATCGGTTACCGAATCTGAAGTCGTTGATTACGATAATAGGCGATGA 2184 45.7 MPAITRGSHCKIENGTKLDDVMVARVTDASAMEKTPPKRKLRSGDAQRQQSPVSEPMNWKSPRRCLNSSPKSPPHSDGKTFNDGFPKLHMSPIKCLFKNPSVKPDWNPKDTQHIKSAKEALHVSTAPTTIMCREDEQSRILNFCKACVEQEKAGSLYVCGCPGTGKSLSMEKVKEQLADWVKESGLQLPDILSINCTSLAKTSDIFTKIMGEVQPQKKRNGSLTPLQHLQSLYSQKAESSCTKMMLIIADELDYLITKDKAVLHNLFMLTTFPFSRCILIGIANAIDLADRFLPRLQALNCKPPVITYRAYSKEQILKILHQRLIVLPFVVFQPQALELCARKVAAVSGDMRKALCVCRNAIDLLEAEHKASSKEEDHIACDASAPEIVKSRESQIVRLDHMAVALSKTFKSPAVETIQSLPQHQQIILCSVVKLVRGGKKDTTIGEVNKSYVDICKSTLIPPVGTLELSNMFTVLNDQGLLKLGQSRDDKTRRVLLKVDEADVMFALQRDGCVFESGNTVLSKLPCSKLGVSIWSIDWLVLMNTLVSGFFSPLKRHRKSIQTFLCLSPLLPPIPSRPTISGRMESLWRAATGQDPSPDDYKGVEFWTSPERAGWLNKQGEYLKTWRRRWFVLKQGKLFWFKDSIVTRASIPRGVIPVNTCLTVKGAEDILHKPCAFELSTTGHDTMYFIAESEREKEEWINSIGRSIVQNSRSVTESEVVDYDNRR 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1726736 1732376 - CmaCh20G003520.1 Cma20g00352 316166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00352 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 370 IPR027417 -
Cma20g00352 727 Pfam CDC6, C terminal winged helix domain 429 507 IPR015163 -
Cma20g00352 727 Pfam AAA domain 151 271 IPR003593 -
Cma20g00352 727 Gene3D - 419 509 IPR036388 -
Cma20g00352 727 SUPERFAMILY Winged helix DNA-binding domain 415 511 IPR036390 -
Cma20g00352 727 ProSiteProfiles PH domain profile. 609 709 IPR001849 -
Cma20g00352 727 MobiDBLite consensus disorder prediction 27 84 - -
Cma20g00352 727 SMART PH_update 610 711 IPR001849 -
Cma20g00352 727 Pfam PH domain 611 707 IPR001849 -
Cma20g00352 727 Pfam AAA lid domain 333 369 IPR041083 -
Cma20g00352 727 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 27 522 - -
Cma20g00352 727 Gene3D - 110 299 IPR027417 -
Cma20g00352 727 SUPERFAMILY PH domain-like 571 709 - -
Cma20g00352 727 SMART Cdc6_C_2 429 508 IPR015163 -
Cma20g00352 727 CDD AAA 136 296 - -
Cma20g00352 727 MobiDBLite consensus disorder prediction 46 76 - -
Cma20g00352 727 SMART AAA_5 152 302 IPR003593 -
Cma20g00352 727 Gene3D - 300 418 - -
Cma20g00352 727 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 27 522 - -
Cma20g00352 727 CDD Cdc6_C 422 504 IPR015163 -
Cma20g00352 727 Gene3D - 608 719 IPR011993 -
Cma20g00352 727 CDD PH_AtPH1 612 718 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01213 Cma-Chr9:8036206 Cma20g00352 Cma-Chr20:1726736 2.54E-30 transposed
Cma02g00749 Cma-Chr2:4552067 Cma20g00352 Cma-Chr20:1726736 3.45E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00352 K02213 - csv:101205741 800.431