Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00352 ATGCCAGCCATTACTCGAGGAAGTCATTGTAAGATTGAGAATGGAACGAAATTGGACGATGTCATGGTTGCGAGAGTGACTGATGCATCTGCTATGGAGAAAACTCCTCCCAAGCGGAAACTGAGATCCGGTGATGCGCAGAGACAACAAAGCCCTGTCTCTGAGCCGATGAATTGGAAATCGCCTCGTCGGTGTCTCAATTCAAGTCCAAAGAGCCCTCCACATAGCGATGGGAAAACGTTTAATGATGGCTTTCCTAAATTACATATGTCACCGATAAAATGCTTGTTCAAGAACCCCAGTGTCAAACCAGATTGGAATCCTAAAGATACCCAACATATAAAATCAGCAAAGGAAGCATTGCACGTATCGACAGCTCCAACTACAATCATGTGCCGCGAGGATGAACAGAGCAGAATCTTAAATTTCTGCAAGGCTTGTGTGGAGCAAGAAAAAGCTGGTAGTTTGTATGTTTGCGGGTGTCCAGGAACTGGCAAATCTTTGTCCATGGAAAAAGTGAAAGAGCAGTTGGCTGATTGGGTGAAAGAGTCAGGTCTTCAGCTGCCAGACATTTTGTCCATCAACTGCACTTCGTTAGCTAAGACGTCAGACATTTTCACTAAGATAATGGGGGAAGTCCAACCGCAAAAGAAAAGGAATGGCTCTTTAACACCCTTGCAACATCTTCAAAGCTTGTACTCCCAAAAGGCAGAGTCATCTTGCACGAAGATGATGTTGATAATTGCTGATGAATTGGATTATTTAATTACAAAGGATAAGGCAGTGCTACATAATCTATTCATGCTCACAACTTTCCCATTTTCAAGATGCATTTTGATAGGAATTGCAAATGCTATTGATTTAGCAGATCGTTTCCTTCCAAGACTTCAGGCATTGAATTGCAAACCTCCGGTCATAACTTATAGGGCTTATTCCAAGGAACAGATCCTCAAGATTCTTCATCAACGGTTAATTGTGCTTCCTTTCGTTGTCTTTCAGCCGCAAGCTCTGGAGCTCTGTGCTAGAAAAGTTGCAGCTGTATCTGGAGATATGAGAAAAGCTCTTTGTGTTTGCAGAAATGCCATTGACTTGTTAGAGGCGGAACATAAAGCATCCTCTAAGGAGGAAGACCATATAGCATGTGATGCTTCAGCACCTGAGATTGTTAAAAGTCGGGAGTCTCAGATTGTGAGGTTGGACCATATGGCTGTTGCCTTATCCAAGACTTTTAAATCACCAGCAGTGGAAACCATACAATCTCTTCCTCAGCATCAACAGATTATTTTATGCTCTGTTGTGAAACTCGTTCGTGGAGGAAAGAAGGATACAACCATAGGAGAGGTAAACAAATCATACGTAGACATCTGCAAATCAACACTAATTCCGCCAGTGGGAACCTTAGAACTTTCAAACATGTTCACAGTGCTAAACGACCAGGGGCTTCTCAAACTCGGCCAGTCTCGAGACGATAAGACGAGGCGAGTGTTGCTGAAAGTCGACGAAGCAGATGTCATGTTCGCATTACAGCGAGATGGTTGTGTATTTGAATCAGGGAATACGGTTCTTTCGAAATTGCCTTGCAGTAAATTAGGCGTCTCGATATGGAGTATAGATTGGTTGGTGCTGATGAACACCTTAGTTTCTGGCTTTTTCTCACCACTCAAGAGGCATAGAAAATCAATACAAACATTTCTCTGTCTCTCTCCCCTTCTCCCTCCGATTCCGTCGCGGCCGACGATCTCCGGTAGGATGGAGAGCCTGTGGCGAGCGGCGACTGGCCAAGATCCGAGTCCGGATGATTACAAAGGCGTTGAATTCTGGACCAGCCCCGAGCGCGCCGGCTGGCTCAACAAGCAGGGCGAATATCTCAAAACCTGGCGTCGCCGATGGTTCGTTCTGAAACAAGGTAAACTCTTCTGGTTTAAGGACTCTATCGTTACTCGTGCCTCCATTCCACGCGGCGTCATCCCTGTCAACACCTGCCTCACCGTCAAGGGCGCCGAGGATATCCTCCATAAGCCCTGCGCCTTCGAGCTCTCCACCACCGGTCATGACACTATGTACTTCATCGCTGAGTCGGAGCGCGAAAAGGAGGAGTGGATCAATTCGATCGGTCGCTCAATAGTTCAGAATTCTCGATCGGTTACCGAATCTGAAGTCGTTGATTACGATAATAGGCGATGA 2184 45.7 MPAITRGSHCKIENGTKLDDVMVARVTDASAMEKTPPKRKLRSGDAQRQQSPVSEPMNWKSPRRCLNSSPKSPPHSDGKTFNDGFPKLHMSPIKCLFKNPSVKPDWNPKDTQHIKSAKEALHVSTAPTTIMCREDEQSRILNFCKACVEQEKAGSLYVCGCPGTGKSLSMEKVKEQLADWVKESGLQLPDILSINCTSLAKTSDIFTKIMGEVQPQKKRNGSLTPLQHLQSLYSQKAESSCTKMMLIIADELDYLITKDKAVLHNLFMLTTFPFSRCILIGIANAIDLADRFLPRLQALNCKPPVITYRAYSKEQILKILHQRLIVLPFVVFQPQALELCARKVAAVSGDMRKALCVCRNAIDLLEAEHKASSKEEDHIACDASAPEIVKSRESQIVRLDHMAVALSKTFKSPAVETIQSLPQHQQIILCSVVKLVRGGKKDTTIGEVNKSYVDICKSTLIPPVGTLELSNMFTVLNDQGLLKLGQSRDDKTRRVLLKVDEADVMFALQRDGCVFESGNTVLSKLPCSKLGVSIWSIDWLVLMNTLVSGFFSPLKRHRKSIQTFLCLSPLLPPIPSRPTISGRMESLWRAATGQDPSPDDYKGVEFWTSPERAGWLNKQGEYLKTWRRRWFVLKQGKLFWFKDSIVTRASIPRGVIPVNTCLTVKGAEDILHKPCAFELSTTGHDTMYFIAESEREKEEWINSIGRSIVQNSRSVTESEVVDYDNRR 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1726736 1732376 - CmaCh20G003520.1 Cma20g00352 316166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00352 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 370 IPR027417 -
Cma20g00352 727 Pfam CDC6, C terminal winged helix domain 429 507 IPR015163 -
Cma20g00352 727 Pfam AAA domain 151 271 IPR003593 -
Cma20g00352 727 Gene3D - 419 509 IPR036388 -
Cma20g00352 727 SUPERFAMILY Winged helix DNA-binding domain 415 511 IPR036390 -
Cma20g00352 727 ProSiteProfiles PH domain profile. 609 709 IPR001849 -
Cma20g00352 727 MobiDBLite consensus disorder prediction 27 84 - -
Cma20g00352 727 SMART PH_update 610 711 IPR001849 -
Cma20g00352 727 Pfam PH domain 611 707 IPR001849 -
Cma20g00352 727 Pfam AAA lid domain 333 369 IPR041083 -
Cma20g00352 727 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 27 522 - -
Cma20g00352 727 Gene3D - 110 299 IPR027417 -
Cma20g00352 727 SUPERFAMILY PH domain-like 571 709 - -
Cma20g00352 727 SMART Cdc6_C_2 429 508 IPR015163 -
Cma20g00352 727 CDD AAA 136 296 - -
Cma20g00352 727 MobiDBLite consensus disorder prediction 46 76 - -
Cma20g00352 727 SMART AAA_5 152 302 IPR003593 -
Cma20g00352 727 Gene3D - 300 418 - -
Cma20g00352 727 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 27 522 - -
Cma20g00352 727 CDD Cdc6_C 422 504 IPR015163 -
Cma20g00352 727 Gene3D - 608 719 IPR011993 -
Cma20g00352 727 CDD PH_AtPH1 612 718 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00352 K02213 CDC6; cell division control protein 6 - csv:101205741 800.431
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01213 Cma-Chr9:8036206 Cma20g00352 Cma-Chr20:1726736 2.54E-30 transposed
Cma02g00749 Cma-Chr2:4552067 Cma20g00352 Cma-Chr20:1726736 3.45E-98 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma09g01213 . 106 793 Core DNA Replication Machinery Family AT4G14700 67.2 9.8e-271 930.2
Cma09g01213 . 73 793 Core DNA Replication Machinery Family AT4G12620 67.7 1.1e-282 969.9
Cma12g00526 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.2 1.3e-142 503.4
Cma04g01092 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 4.2e-156 548.5
Cma17g00438 . 92 588 Core DNA Replication Machinery Family AT4G29910 58.3 3.6e-163 572.4
Cma05g00856 . 1 261 Core DNA Replication Machinery Family AT1G26840 67.8 3.7e-92 335.5
Cma06g01701 CST 1031 1774 Core DNA Replication Machinery Family AT1G79150 56.9 8.6e-230 794.3
Cma06g01755 . 218 1156 Core DNA Replication Machinery Family AT1G44900 75.4 0.0e+00 1344.3
Cma14g01060 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1337.0
Cma07g00117 CST 1 572 Core DNA Replication Machinery Family AT5G46280 81.5 3.2e-268 921.4
Cma03g01388 CST 1 224 Core DNA Replication Machinery Family AT5G46280 54.4 9.2e-66 248.8
Cma19g00684 . 20 884 Core DNA Replication Machinery Family AT2G16440 75.1 0.0e+00 1149.4
Cma11g01087 . 107 738 Core DNA Replication Machinery Family AT2G16440 64.9 3.9e-262 901.7
Cma12g01169 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.6 0.0e+00 1116.3
Cma07g00004 . 523 1345 Core DNA Replication Machinery Family AT5G44635 72.8 0.0e+00 1189.9
Cma17g01031 . 8 719 Core DNA Replication Machinery Family AT4G02060 85.8 0.0e+00 1221.8
Cma08g00472 . 11 690 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1152.9
Cma20g00352 . 30 509 Core DNA Replication Machinery Family AT2G29680 59.8 1.1e-158 557.4
Cma20g00352 . 30 479 Core DNA Replication Machinery Family AT1G07270 59.1 2.4e-144 509.6
Cma08g00225 . 238 830 Core DNA Replication Machinery Family AT3G25100 76.1 4.4e-260 894.4
Cma17g01271 . 241 833 Core DNA Replication Machinery Family AT3G25100 76.6 2.2e-256 882.1
Cma06g00352 . 39 805 Core DNA Replication Machinery Family AT3G09660 74.4 0.0e+00 1109.7
Cma19g00466 . 16 642 Core DNA Replication Machinery Family AT2G14050 78.3 1.0e-286 983.0
Cma20g00753 . 1 398 Core DNA Replication Machinery Family AT2G20980 55.0 8.3e-114 407.9
Cma09g00770 . 7 968 Core DNA Replication Machinery Family AT1G77320 50.1 6.7e-261 897.9
Cma08g00461 CST 25 146 Core DNA Replication Machinery Family AT4G02110 56.5 4.5e-38 157.9
Cma08g00673 . 1 192 Core DNA Replication Machinery Family AT1G80190 66.5 5.2e-72 268.1
Cma07g01186 . 1 145 Core DNA Replication Machinery Family AT3G12530 72.4 3.1e-61 231.9
Cma04g02907 . 1103 1270 Core DNA Replication Machinery Family AT1G19080 61.3 1.7e-53 206.5
Cma04g02907 . 1103 1270 Core DNA Replication Machinery Family AT3G55490 61.3 1.7e-53 206.5
Cma14g02049 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.7 5.7e-52 201.4
Cma02g00514 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1763.4
Cma18g00719 . 2 620 Core DNA Replication Machinery Family AT1G67630 63.8 1.8e-224 776.2
Cma08g00169 . 498 940 Core DNA Replication Machinery Family AT1G67320 65.3 1.8e-182 636.3
Cma09g01290 . 39 477 Core DNA Replication Machinery Family AT5G41880 65.3 1.1e-175 613.6
Cma07g00817 . 1 1086 Core DNA Replication Machinery Family AT5G63960 81.1 0.0e+00 1807.7
Cma14g00418 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.6 1.7e-205 712.6
Cma08g00169 . 498 940 Core DNA Replication Machinery Family AT1G67320 65.3 1.8e-182 636.3
Cma02g01335 . 1 2094 Core DNA Replication Machinery Family AT1G08260 70.4 0.0e+00 2946.0
Cma02g01335 . 9 2200 Core DNA Replication Machinery Family AT2G27120 67.4 0.0e+00 2919.4
Cma01g00753 . 529 1044 Core DNA Replication Machinery Family AT5G22110 65.8 1.5e-192 669.8
Cma02g01296 . 1 928 Core DNA Replication Machinery Family AT5G22010 62.4 3.1e-305 1045.0
Cma20g00138 CCT,ECH 67 182 Core DNA Replication Machinery Family AT5G22010 64.1 7.2e-36 150.2
Cma16g01020 . 1 333 Core DNA Replication Machinery Family AT1G63160 89.5 7.3e-172 600.5
Cma03g00215 . 1 335 Core DNA Replication Machinery Family AT5G27740 83.3 1.7e-166 582.8
Cma01g01369 . 1 336 Core DNA Replication Machinery Family AT1G21690 80.7 6.4e-152 534.3
Cma15g00666 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.3 6.5e-153 537.7
Cma04g02374 . 1 363 Core DNA Replication Machinery Family AT1G77470 73.0 2.1e-148 522.7
Cma05g01409 . 26 604 Core DNA Replication Machinery Family AT2G06510 68.8 1.8e-245 845.9
Cma06g00602 CST 34 701 Core DNA Replication Machinery Family AT2G06510 52.2 6.2e-201 698.0
Cma16g01216 CST 34 661 Core DNA Replication Machinery Family AT2G06510 52.1 9.3e-189 657.5
Cma11g00209 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.3 3.8e-243 838.2
Cma06g00602 CST 10 808 Core DNA Replication Machinery Family AT5G45400 51.1 6.3e-228 788.1
Cma16g01216 CST 10 661 Core DNA Replication Machinery Family AT5G45400 54.5 1.0e-206 717.6
Cma11g00209 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.4 3.6e-236 815.1
Cma06g00602 CST 5 822 Core DNA Replication Machinery Family AT4G19130 53.1 2.1e-230 796.2
Cma16g01216 CST 5 661 Core DNA Replication Machinery Family AT4G19130 58.8 2.8e-214 742.7
Cma11g01183 . 1 376 Core DNA Replication Machinery Family AT5G26680 85.7 1.6e-184 642.9
Cma14g01944 . 1 1102 Core DNA Replication Machinery Family AT1G08840 51.8 8.7e-296 1013.8
Cma14g01473 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.3 2.4e-115 412.5
Cma20g00522 . 44 804 Core DNA Replication Machinery Family AT1G08130 68.3 1.2e-292 1003.0
Cma20g00522 . 204 804 Core DNA Replication Machinery Family AT1G49250 68.4 8.0e-239 823.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003604 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 2 1 1 3 11 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00352 Cma_Chr20 FPKM 26.205729 26.141697 26.997465 23.058458 19.185009 19.333982 17.504843 46.48748 48.700066 41.993671