Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00355 ATGGCAATCGAAACCGCTCGTCCCCCCACTCCTGCCCGAACATCACAGGAGATTTCTCCCCCGCTGGAGACTCCGATAGACGGAACGCCGCAGGATTCAGACATCACCACGGCGGAGACCAATCAATTCGTCCACCTCAGCAATGACATTTTCCCTTGCACTGCTTGCGGCGAGATTTTCCCCAAGCATCAATTGCTCGAACAGCACCAATCGGCCAAACATGCTGTGTCGGAGCTCGCCGATTCCGATTCCGGGAAGAATATTGTTCGAATCATTTTCGAGACGGGATGGACGAGTAAAGAAAAAAGTCCGAAAATCGTTCGAATCTTGAAAATCCACAATAGCCCAAAGATCGTCTCCAGATTCGAGGAGTACAGAGAGTCGGTGAAGGCGAAAGCGGCGGCCCGAAACGGCGCGGTGAAGCGTCGGGACGAGCGGTGCATCGCCGACGGAAACGAGCTGCTGAGGTTTCACTGTGCGACGTTTTTATGCGATTTGGGGCAAAACGGTAATTCCAGCCTCTGCGGGCAGCAATTTTGTAGCATTTGTGGGATAATCAAATCGGGATTCTCCCACAAGTTGGACGGAATATCGACGTTATCGAGTAGCTGGAGGGCACACGTGGCGATCCCTGAGGACATCGAAGAGGAGTTCAAGTTTCTGAACGTGAAGCGGGCGATTCTGGTTTGTCGGGTTGTTGCAGGTCGGGTCGGGTCAGACGCCGATGAGCCGGAAAAAGACGGCGAAGGGTTTCACTCCGTCGTCGGGCGAAGTGGTAGTGGGGCCCAGACCACGTTGGACGAGGAAGAGCTGTTGGTTTTCAATCCGAGGGCTGTGCTCCCCTGCTTCGCGATTGTATACGAAATCTGA 870 54.02 MAIETARPPTPARTSQEISPPLETPIDGTPQDSDITTAETNQFVHLSNDIFPCTACGEIFPKHQLLEQHQSAKHAVSELADSDSGKNIVRIIFETGWTSKEKSPKIVRILKIHNSPKIVSRFEEYRESVKAKAAARNGAVKRRDERCIADGNELLRFHCATFLCDLGQNGNSSLCGQQFCSICGIIKSGFSHKLDGISTLSSSWRAHVAIPEDIEEEFKFLNVKRAILVCRVVAGRVGSDADEPEKDGEGFHSVVGRSGSGAQTTLDEEELLVFNPRAVLPCFAIVYEI 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1740357 1741226 - CmaCh20G003550.1 Cma20g00355 316169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00355 289 MobiDBLite consensus disorder prediction 1 35 - -
Cma20g00355 289 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 27 287 - -
Cma20g00355 289 SUPERFAMILY ADP-ribosylation 77 288 - -
Cma20g00355 289 Gene3D - 86 289 - -
Cma20g00355 289 MobiDBLite consensus disorder prediction 240 261 - -
Cma20g00355 289 PANTHER NUCLEIC ACID BINDING PROTEIN 27 287 - -
Cma20g00355 289 ProSitePatterns Zinc finger C2H2 type domain signature. 53 74 IPR013087 -
Cma20g00355 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 79 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00355 Cma-Chr20:1740357 Cma04g00922 Cma-Chr4:4757288 1.46E-54 dispersed
Cma02g00755 Cma-Chr2:4569350 Cma20g00355 Cma-Chr20:1740357 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36989 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00355 - - csv:101205506 501.13