Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00396 ATGGCCATTAATATTCCTCTCTGTATTGCTTCTTTTCTCTCATTTTTTTTACTGGTCGAAGCCAGAATCCCCGGAATTTACTCCGGCGGCCCATGGCAGAGCGCTCACGCCACCTTCTACGGTGGCTCCGATGCTTCCGGCACAATGGGCGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTATGGTGTCAACACGGCGGCGCTGAGTACGGCTCTGTTTAATAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGTGCTAATGATCCACGGTGGTGCCATTCCGGCAGCCCGTCGATTTTGATTACTGCTACTAATTTCTGCCCGCCGAACTATGCTCTGCCCAACGACAATGGCGGCTGGTGTAACCCTCCTCGTACCCACTTCGACCTTGCCATGCCCATGTTCCTCAAAATCGCTGAGTACCGCGCCGGTATCGTCCCCGTCTCTTACCGCCGAGTGCCATGCCGGAAGCACGGAGGAATCAGGTTCACGATCAACGGCTTTCGTTACTTCAATCTGGTTCTAATCACCAACGTGGCAGGTGCAGGGGATATCGTGCGGGTTAGCGTTAAAGGTACAAGAACCGGGTGGATGAGCATGACCAGAAACTGGGGGCAAAATTGGCAATCCAATGCCGTTTTGGTGGGCCAAGCTCTGTCGTTTAGAGTAACCGGCAGTGACCGTCGAACCTCAACATCATGGAACATCGTTCCTTCCCATTGGCAGTTCGGCCAAACTTTCACGGGGAAAAACTTTCGTGTTTAA 777 52.77 MAINIPLCIASFLSFFLLVEARIPGIYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKHGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSMTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPSHWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1904421 1905871 + CmaCh20G003960.1 Cma20g00396 316210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00396 258 PANTHER EXPANSIN-A15 7 257 IPR002963 GO:0009664
Cma20g00396 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Cma20g00396 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Cma20g00396 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Cma20g00396 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Cma20g00396 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cma20g00396 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Cma20g00396 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Cma20g00396 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Cma20g00396 258 Gene3D - 164 256 IPR036749 -
Cma20g00396 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cma20g00396 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Cma20g00396 258 PANTHER EXPANSIN 7 257 - -
Cma20g00396 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cma20g00396 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Cma20g00396 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Cma20g00396 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cma20g00396 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Cma20g00396 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Cma20g00396 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Cma20g00396 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Cma20g00396 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Cma20g00396 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Cma20g00396 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Cma20g00396 258 SMART dpbb_1 67 154 IPR007112 -
Cma20g00396 258 Gene3D - 22 160 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00123 Cma20g00396 CCT
Cma01g00609 Cma20g00396 CCT
Cma01g00609 Cma20g00396 ECH
Cma13g00123 Cma20g00396 ECH
Cma02g00797 Cma20g00396 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00814 Cma-Chr19:7812356 Cma20g00396 Cma-Chr20:1904421 2.99E-92 dispersed
Cma20g00396 Cma-Chr20:1904421 Cma04g01668 Cma-Chr4:8389926 1.24E-126 dispersed
Cma01g00609 Cma-Chr1:3176629 Cma20g00396 Cma-Chr20:1904421 2.73E-169 wgd
Cma13g00123 Cma-Chr13:843427 Cma20g00396 Cma-Chr20:1904421 1.01E-167 wgd
Cma02g00797 Cma-Chr2:4725802 Cma20g00396 Cma-Chr20:1904421 2.72E-179 wgd
Cma20g00396 Cma-Chr20:1904421 Cma03g00422 Cma-Chr3:4515929 2.45E-168 wgd
Cma20g00396 Cma-Chr20:1904421 Cma04g00211 Cma-Chr4:1005461 1.32E-169 wgd
Cma20g00396 Cma-Chr20:1904421 Cma04g01180 Cma-Chr4:6015443 4.43E-138 wgd
Cma20g00396 Cma-Chr20:1904421 Cma04g02655 Cma-Chr4:18055290 1.28E-144 wgd
Cma20g00396 Cma-Chr20:1904421 Cma07g00999 Cma-Chr7:5154276 5.33E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00396 - - csv:101203979 522.316