Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00405 ATGGGTAACGGGATTGGGAAGCTCGGCGTTTGCTTCGCCGGAATCGACGATGGTAAGCGGCGGCCGGATATTTCCGTTCTGATATCGAATCCACTAGATGAAGGATTAGGGCACTCGTTCTGCTATGTCCGGCCGGATCCCTCGAGGCTTTCGTCGTCAAAAGTTCATTCCGAAGAAACCACCACTTTTCGATCAATTTCCGGCGCCGCTGTGAGTGCCAATACATCGACGCCTCTTTCTACTTCTCTTCTTGATCTGTATTCATACAGTAGCATTGATCGAGCGCCGGCTTTTGAAAGCTCGAATTCTTTCGCTTCAATCCCTTTGCAGCCAATCCCTAGAAATATGATCAATTCGGGTCCAATTTCGGGTCCGATTTCGGGGCATTTGGAAAGAGGGTTTTTATCGGGTCCAATTGAGCGAGGGTTCATGTCGGGTCCATTGGATAAAGGGATTTTTTCGGGTCCGCTCGATAATTCTTCATCCACTGAATTTCAGAGGAGTTTTTCTCATGGAGGCGGGTTTAATTCCAGATCTAGATCCAGAAAAAGCCGGTTGATTCGGATTCTTAAAAGTGCAATTCCTAAATCGATTTATCGAGGGAAGAATTCCATTGTGGCTCCGATTAAAGCGGTGAAAGAACCCGATTGGATCGTCATGCCCGAGAAACATAATGAGAATTTGACGGTGAGTAGTTTGAATTTCAGTAGCGAGGGGAGTTTGGAAGATGATGAATCAATGCAGAGCCAAAATCTGCAGTGGGCGCAAGGAAAAGCAGGGGAAGATCGAGTTCATGTCGTAGTTTCTGAAGAACATGGATGGGTTTTCGTTGGGATTTATGATGGATTTAACGGTCCTGATGCTCCTGATTACCTCTTATCGAATTTATACTCCTCTGTTCATAAAGAGCTCAAAGGTTTGTTATGGGGCGAAAACCTCGATTTGGCTGGCGTCCCCGCTCCGGTCACTTCGCCGGTTAATCGGACGGGTGATGCTTGTTCTCGGTGTGTAGAACTAGAGAATCATCCTTCAAGAAGAAGAAAAGGTAAGAATTCAAGAGGCAAATTTAGAGGAGCGGCTGAGAAGTGGGAGGATAATCAGCGGCGGTGGAAATGTGAATGGGATCAGGAAAGATTAGAACTCGATCGGAGATTAAAGGAGCAGTTGAATCGATCTGAATCGAACGGATCGAGATCGATTAATCATTCGGATGTTCTTAAAGCTCTGTCCCAGGCATTGAAGAACACAGAAGAGGCCTATTTGGATATTGCAGACAAGGTGCTCGATGAAAATCCTGAACTAGCTTTGATGGGCTCTTGTGTGCTCGTGATGCTTATGAAGGGTGATGATGTTTATGTTATGAATGTCGGCGATAGCCGAGCTGTTTTAGCGCAGAAGGCCGATCCTGATTACTGGCTCAGGATGATTCGACAGGATTTGGAGAGGATTAATGAAGAACCAGTTCATGACATTGATGCAGCATTCAAGCCTGCTAACCTTGCTGCTTTTCAGCTTTCCATGGATCATAGTACTAATGTTCATGAGGAAGTTCGACGAATAAAAAACGAACACCCTGATGATGCCGGTGCCGTGATGAACGACCGTGTGAAAGGCTCGTTGAAGGTTACTCGGGCATTCGGTGCTGGTTTCCTCAAACAGCCAAAATGGAACAATGCATTGTTGGAGATGTTCAGAATAGACTACGTAGGGAGATTGCCATACATCAGTTGTCAGCCATGTCTCTACCACCACAGATTGGGACCAAAAGACAGATTTTTGATACTATCATCTGATGGACTCTACCAGTACTTCACAAACGAAGAAGCAGTTTCCGAAGTCGAGCTTTTCATCACGTTACAACCCGAAGGCGACCCGGCTCAACATCTGATTGAATTACTGCTGTTTCGAGCTGCAAAGCGAGCTGGTATGGATTTCCACGAGCTGCTCGAAATACCGCAGGGCGACCGGAGGAAGTACCACGACGATGTGTCGATCATCGTGATTTCATTAGAAGGGAGGATCTGGAGATCCTGTGTATAA 2040 46.27 MGNGIGKLGVCFAGIDDGKRRPDISVLISNPLDEGLGHSFCYVRPDPSRLSSSKVHSEETTTFRSISGAAVSANTSTPLSTSLLDLYSYSSIDRAPAFESSNSFASIPLQPIPRNMINSGPISGPISGHLERGFLSGPIERGFMSGPLDKGIFSGPLDNSSSTEFQRSFSHGGGFNSRSRSRKSRLIRILKSAIPKSIYRGKNSIVAPIKAVKEPDWIVMPEKHNENLTVSSLNFSSEGSLEDDESMQSQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSSVHKELKGLLWGENLDLAGVPAPVTSPVNRTGDACSRCVELENHPSRRRKGKNSRGKFRGAAEKWEDNQRRWKCEWDQERLELDRRLKEQLNRSESNGSRSINHSDVLKALSQALKNTEEAYLDIADKVLDENPELALMGSCVLVMLMKGDDVYVMNVGDSRAVLAQKADPDYWLRMIRQDLERINEEPVHDIDAAFKPANLAAFQLSMDHSTNVHEEVRRIKNEHPDDAGAVMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGRLPYISCQPCLYHHRLGPKDRFLILSSDGLYQYFTNEEAVSEVELFITLQPEGDPAQHLIELLLFRAAKRAGMDFHELLEIPQGDRRKYHDDVSIIVISLEGRIWRSCV 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1941128 1944158 + CmaCh20G004050.1 Cma20g00405 316219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00405 679 Gene3D - 220 675 IPR036457 -
Cma20g00405 679 PANTHER PHOSPHATASE 2C, PUTATIVE-RELATED 15 679 - -
Cma20g00405 679 SUPERFAMILY PP2C-like 258 671 IPR036457 -
Cma20g00405 679 ProSiteProfiles PPM-type phosphatase domain profile. 244 670 IPR001932 -
Cma20g00405 679 SMART PP2C_4 245 668 IPR001932 -
Cma20g00405 679 Coils Coil 406 426 - -
Cma20g00405 679 CDD PP2Cc 381 670 IPR001932 -
Cma20g00405 679 Pfam Protein phosphatase 2C 399 620 IPR001932 -
Cma20g00405 679 PANTHER PROTEIN PHOSPHATASE 2C 15 679 IPR015655 GO:0004722|GO:0006470
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00802 Cma20g00405 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00846 Cma-Chr6:4703882 Cma20g00405 Cma-Chr20:1941128 9.97E-46 dispersed
Cma06g01497 Cma-Chr6:9510194 Cma20g00405 Cma-Chr20:1941128 1.54E-78 dispersed
Cma14g01621 Cma-Chr14:12163289 Cma20g00405 Cma-Chr20:1941128 7.25E-75 dispersed
Cma16g01071 Cma-Chr16:8200291 Cma20g00405 Cma-Chr20:1941128 3.12E-45 dispersed
Cma20g00405 Cma-Chr20:1941128 Cma07g00403 Cma-Chr7:1743228 1.19E-39 dispersed
Cma02g00802 Cma-Chr2:4762278 Cma20g00405 Cma-Chr20:1941128 0 wgd
Cma20g00405 Cma-Chr20:1941128 Cma03g00425 Cma-Chr3:4535391 0 wgd
Cma20g00405 Cma-Chr20:1941128 Cma07g00996 Cma-Chr7:5127919 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00405 - - cmax:111484437 1313.52