Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00406 ATGGCAGAAGGGGAGGATATTCAGCCACTTGTCTGCGACAATGGAACAGGAATGGTCAAGGCTGGCTTTGCTGGAGATGATGCTCCAAGGGCCGTGTTTCCTAGTATAGTAGGTCGACCAAGGCATACTGGTGTGATGGTCGGAATGGGGCAAAAGGATGCGTATGTTGGGGATGAAGCTCAGTCGAAACGTGGTATATTAACTTTGAAATATCCCATAGAGCATGGTATAGTGAGTAATTGGGATGACATGGAGAAAATTTGGCATCATACCTTCTACAATGAACTCCGAGTGGCTCCAGAAGAGCACCCTGTCCTACTCACGGAAGCACCTCTGAACCCAAAGGCAAACCGTGAAAAAATGACCCAAATTATGTTCGAGACCTTCAACACTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCCCTCTATGCTAGTGGACGCACAACTGGTATTGTTATGGATTCTGGAGACGGTGTCAGTCACACAGTCCCAATCTACGAGGGGTATGCTCTCCCCCATGCCATACTCCGTCTTGACCTTGCTGGCCGTGACCTCACTGATGGCCTTATGAAAATCTTGACTGAACGTGGGTATTCCTTCACCACCTCAGCTGAGCGAGAAATTGTGAGGGACATGAAGGAAAAACTAGCATATATTGCCCTCGACTATGAGCAAGAACTTGAAACTTCCAAAAATGCTTCATCTGTCGAGAAGAGCTATGAACTGCCTGATGGGCAGGTTATCACAATTGGTGCAGAACGTTTCCGATGCCCTGAAGTTCTTTTCCAGCCTTCAATGATAGGAATGGAAGCTGCAGGTATCCATGAAACAACATATAACTCCATCATGAAATGTGATGTTGACATCAGAAAGGATCTGTATGGGAATATTGTTCTTAGTGGTGGATCAACCATGTTCCCTGGCATTGCTGACAGAATGAGCAAGGAAATAGCTGCATTAGCTCCAAGCAGCATGAAAATAAAGGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTGGCCTCACTTAGCACGTTTCAGCAGATGTGGATCGCAAAGGCAGAGTATGATGAATCTGGTCCATCCATTGTGCACAGGAAATGCTTCTGA 1134 46.38 MAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKNASSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIAALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1944722 1947304 - CmaCh20G004060.1 Cma20g00406 316220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00406 377 Gene3D - 140 340 - -
Cma20g00406 377 PANTHER ACTIN 1 376 IPR004000 -
Cma20g00406 377 PANTHER ACTIN-97 1 376 - -
Cma20g00406 377 PRINTS Actin signature 28 37 IPR004000 -
Cma20g00406 377 PRINTS Actin signature 51 62 IPR004000 -
Cma20g00406 377 PRINTS Actin signature 63 85 IPR004000 -
Cma20g00406 377 PRINTS Actin signature 117 130 IPR004000 -
Cma20g00406 377 PRINTS Actin signature 142 161 IPR004000 -
Cma20g00406 377 PRINTS Actin signature 238 254 IPR004000 -
Cma20g00406 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cma20g00406 377 SMART actin_3 7 377 IPR004000 -
Cma20g00406 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cma20g00406 377 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
Cma20g00406 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cma20g00406 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cma20g00406 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cma20g00406 377 Gene3D - 10 371 - -
Cma20g00406 377 Pfam Actin 5 377 IPR004000 -
Cma20g00406 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00806 Cma20g00406 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00386 Cma-Chr15:1755346 Cma20g00406 Cma-Chr20:1944722 0 dispersed
Cma20g00406 Cma-Chr20:1944722 Cma02g00615 Cma-Chr2:3705529 0 dispersed
Cma02g00806 Cma-Chr2:4772408 Cma20g00406 Cma-Chr20:1944722 0 wgd
Cma20g00406 Cma-Chr20:1944722 Cma03g00427 Cma-Chr3:4537903 0 wgd
Cma20g00406 Cma-Chr20:1944722 Cma04g02644 Cma-Chr4:18005520 0 wgd
Cma20g00406 Cma-Chr20:1944722 Cma07g00992 Cma-Chr7:5110022 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00406 K10355 - csin:114318813 748.814