Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00410 ATGGAGGGGGAGAACAATGGCGGCTTCTTTCGGAGTTTGATCGACTTGGTGAACGACGTAGCTTTGATCTCAGATTACAGATACGCGGTCAGAAAGCAGTATTGTAATCTAGCTAGGCGACTGAAGCTGTTGATCCCAATGTTTGAGGAGATGAGGGATATGAAGCAGGCGCTGCCGGACAATACCGTGGGAGCTCTTGTTTCGTTGAAGAAAGCTATGGAATCTACCAAGGAGTTGCTTAGACTTGGGACCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAACTTTTGAATCAATTTCAAGAGTTGTCAGCAAGACTAGAGCAAGCTTTGAATGAAATTTCACATGTAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTCCTCTCTCAATTCAAAAGAGCTAGAGGAAGGAATGATGCACAGGATGTCGAGCTGTATTCTAATCTCCACACTCTCTATAACAACAGCAAAGACTTAGCTACTGATCCTTCTGTCTTGAAGGGACTGGCTGAAAAGTTGCAGTTGATGAACGTAGATGATCTTACTCAAGAGTCCCTTGCCTTGCATGAAATGGTTTCGGCCAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATACTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGCGCTTCTTCAAAAGAACAAAGTCACACTGGTGGACAAGCGACTGCTGGTAAGAAAGATATATCGTCCCTTCCCATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTTATTGTCTCCACCGGACAGACCTATGAACGTACATTCATTGAGAAGTGGCTGGCAGACGGACACTCGACATGCCCAAAAACTCAACAAGTCCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGCAGTCTCATAGCTCAATGGTGCGAGGCCAATGGAATTGAACCACCACAACGTTCCAGCAGTTCTCAGCCCAGTGAATTTGCAAATCCTGTTGAACGCTCCAAGTATGAAGCTCTACTCCGCAAACTCACATCAGCTAACATTGAAGACAAGCGATCTGCTGCGGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTAGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGACCTCCTTTCAACAACGGACCCCCTCACTCAAGAACATGCCGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGTATCATGTCCTGTAGGGCAGCGCCTGGCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCTGTTGTAGATGAATATAAAGTAATGATTGGCGCATCAGGAGCCATTCCACCACTTATTGCACTGCTCAATGAAGGTACTCAGAGGGGGAAGAAGGACGCTGCAACCGCTCTTTTCAACTTGTGTTTCTACCAAGGGAACAAGGTAAAGGCAGTCAGGGGTGGTGTTGTTTCCATATTGATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTGGCAATTCTAGCCATACTGGCCAGCAATTCTGAAGGTCGGGCTGCCATTGGAGCTGCCGAATCCGTCCCCACTTTAGTAGCTCTCATTGGAACAAGATCCCCTAGGAACAGAGAAAATGCAGCTGCAGTTTTGATGCATATTTGCACGGGAGACCGACGACATATCGTGGAAGCAAAGGAGCTCGGTGTAATTAGTTTGCTTACAGATTTGGCTGAAAATGGCACAGATAGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACTGAGCAGCAGAAAGAGGCTGAGGTTCAGACCCGGCTGTTGCTACCACCACCGCCACCTCCCACAATCGGAAACGTCGAAAGCTAA 1971 46.02 MEGENNGGFFRSLIDLVNDVALISDYRYAVRKQYCNLARRLKLLIPMFEEMRDMKQALPDNTVGALVSLKKAMESTKELLRLGTEGSKIYLALEREQLLNQFQELSARLEQALNEISHVDLDISDEVKEQVELVLSQFKRARGRNDAQDVELYSNLHTLYNNSKDLATDPSVLKGLAEKLQLMNVDDLTQESLALHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGASSKEQSHTGGQATAGKKDISSLPIPEDFRCPISLDLMKDPVIVSTGQTYERTFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEANGIEPPQRSSSSQPSEFANPVERSKYEALLRKLTSANIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPGIVHVLKWGSMEARENAAATLFSLSVVDEYKVMIGASGAIPPLIALLNEGTQRGKKDAATALFNLCFYQGNKVKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAESVPTLVALIGTRSPRNRENAAAVLMHICTGDRRHIVEAKELGVISLLTDLAENGTDRGKRKATQLLDQINRFTEQQKEAEVQTRLLLPPPPPPTIGNVES 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1964270 1968213 + CmaCh20G004100.1 Cma20g00410 316224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00410 656 MobiDBLite consensus disorder prediction 231 248 - -
Cma20g00410 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 392 430 IPR000225 GO:0005515
Cma20g00410 656 Pfam U-box domain 257 327 IPR003613 GO:0004842|GO:0016567
Cma20g00410 656 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Cma20g00410 656 Coils Coil 618 638 - -
Cma20g00410 656 SUPERFAMILY ARM repeat 353 632 IPR016024 -
Cma20g00410 656 SMART arm_5 381 421 IPR000225 GO:0005515
Cma20g00410 656 SMART arm_5 422 462 IPR000225 GO:0005515
Cma20g00410 656 SMART arm_5 545 585 IPR000225 GO:0005515
Cma20g00410 656 SMART arm_5 587 627 IPR000225 GO:0005515
Cma20g00410 656 SMART arm_5 463 503 IPR000225 GO:0005515
Cma20g00410 656 SMART arm_5 504 544 IPR000225 GO:0005515
Cma20g00410 656 Coils Coil 95 115 - -
Cma20g00410 656 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 641 - -
Cma20g00410 656 Pfam Armadillo/beta-catenin-like repeat 382 420 IPR000225 GO:0005515
Cma20g00410 656 Pfam Armadillo/beta-catenin-like repeat 465 502 IPR000225 GO:0005515
Cma20g00410 656 PANTHER U BOX DOMAIN-CONTAINING 11 641 - -
Cma20g00410 656 Gene3D - 10 119 IPR036537 GO:0007166
Cma20g00410 656 SUPERFAMILY RING/U-box 251 332 - -
Cma20g00410 656 Gene3D - 336 641 IPR011989 -
Cma20g00410 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 330 IPR013083 -
Cma20g00410 656 MobiDBLite consensus disorder prediction 231 251 - -
Cma20g00410 656 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
Cma20g00410 656 CDD RING-Ubox_PUB 261 303 IPR045210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00132 Cma20g00410 CCT
Cma01g00596 Cma20g00410 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00906 Cma-Chr18:7786736 Cma20g00410 Cma-Chr20:1964270 0 dispersed
Cma20g00410 Cma-Chr20:1964270 Cma20g00717 Cma-Chr20:3308472 6.47E-135 dispersed
Cma09g00639 Cma-Chr9:3014929 Cma20g00410 Cma-Chr20:1964270 2.22E-08 transposed
Cma12g00122 Cma-Chr12:504980 Cma20g00410 Cma-Chr20:1964270 1.15E-30 transposed
Cma01g00596 Cma-Chr1:3130763 Cma20g00410 Cma-Chr20:1964270 0 wgd
Cma13g00132 Cma-Chr13:899216 Cma20g00410 Cma-Chr20:1964270 0 wgd
Cma02g00810 Cma-Chr2:4791084 Cma20g00410 Cma-Chr20:1964270 5.52E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00410 - - csv:101221150 1082.4