Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00425 ATGAGCAAAGGTTTTTGGATGACTAAGGGTCCTGGGCATGAAAATGATGCAAATTCAACTTTTGACAGCCCATCATTACTAGACACTAAGCGGGCACATCACTGGTTTATAGATGGTTGTGAAACACAGGTTTTCCCCAACAAGAAACAAGCAATTCAAGCTTCGAATAGTAAAATGACCGGAGCGCTGTCAAATGTGAATGTTCTTCCTTGGGATCATCATGCTGCTAATTATCAGTCTGTTTCACATCAACTTATCGGTCGCCTACTTGGACCTGAATCAATAAGGTCCGCTGACTTCGATCTAACAAAAGCATCTTCTGTAATGTCTGATAATTTGGATCTCAGGAGAAAAGGTATTGAAGTTGAAGAGCAATATGGAGAGGATGCATCTGTTGGGTTGTCTGTTTCTCATGGTTTGGAGGACCCTGAAACATGTCTTAGCTACGGAGGAATTAGAAAAGTTAAAGTCAATCAGATTAAAGATAATATACATGATCTGCAACCATGTCTAAGAAGTAATTCTAATAGGGAAGATGGTGGTCAACTTACCATAGAAGGCTACTATAAGGATATCGAAACAGGTCTTGTGTCTGTGGGATCAGCCTATATTAAGGAGGATGACAGTTTCAATTTGATGAACCAAACCTCCAATGATGGGGATCGCCACATTAGGTTACTAGGTCATAATGGGAAGGTGGTCGACAATGCTATCTCCGTCGGTGATGATTATGGTAAGCGGGATGCAAATATAATCTCATTTGACGGATTTCCCAATGAGCAAGATATTATCTCCTTAGGCAGGTCTCTGGGTAGCCATGACTCAACATTCTATGAACCTTCATTCCAAGCAACTGAAGCTGATGGTGTCACAGAATTGGAATCATCTAGTTTTGATGTAGGTGTAAGCAGTACACAGATAGCTAAGCAAAAGCCTGATACGATGCCGAAGAGTAGACCAGAATACAAAATGAGGAAAGAAGCTCCAAACAGCTTTCCTTCAAATGTTAGAAGCTTGATATCAACTGGTATGCTCGATGGCGTTCCTGTTAAGTACGTTTCTGTAGCCAGAGAGGAGCTTCGTGGAATTATAAGGGGATCTGGCTATCTTTGTGGATGCCAATCTTGCAACTTTTCCAAGATGCTTAATGCCTACGAGTTTGAGCGTCACGCTGGCTGCAAAACAAAACACCCAAATAATCATATATACTTTGAGAATGGGAAGACGATTTACCAAATAGTACAAGAATTAAGAAGCACCCCAGAGAGCTTGTTGTTTGATACAATTCAAACAATATTTGGTGCACCTATCAATCAGAAATCTTTTCGGATTTGGAAAGAATCATTTCAAGCAGCTACTCGTGAGCTTCAGCGCATATATGGTAAGGATGAACTTAACCTTTAG 1404 40.67 MSKGFWMTKGPGHENDANSTFDSPSLLDTKRAHHWFIDGCETQVFPNKKQAIQASNSKMTGALSNVNVLPWDHHAANYQSVSHQLIGRLLGPESIRSADFDLTKASSVMSDNLDLRRKGIEVEEQYGEDASVGLSVSHGLEDPETCLSYGGIRKVKVNQIKDNIHDLQPCLRSNSNREDGGQLTIEGYYKDIETGLVSVGSAYIKEDDSFNLMNQTSNDGDRHIRLLGHNGKVVDNAISVGDDYGKRDANIISFDGFPNEQDIISLGRSLGSHDSTFYEPSFQATEADGVTELESSSFDVGVSSTQIAKQKPDTMPKSRPEYKMRKEAPNSFPSNVRSLISTGMLDGVPVKYVSVAREELRGIIRGSGYLCGCQSCNFSKMLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTIFGAPINQKSFRIWKESFQAATRELQRIYGKDELNL 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2015300 2018149 - CmaCh20G004250.1 Cma20g00425 316239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00425 467 PANTHER DNA-BINDING PROTEIN 2 467 - -
Cma20g00425 467 MobiDBLite consensus disorder prediction 301 320 - -
Cma20g00425 467 MobiDBLite consensus disorder prediction 1 22 - -
Cma20g00425 467 PANTHER AUTOIMMUNE REGULATOR 2 467 - -
Cma20g00425 467 Pfam Tify domain binding domain 362 417 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00425 - - - bhj:120089449 867.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00312 Cma-Chr6:1478464 Cma20g00425 Cma-Chr20:2015300 1.22E-46 dispersed
Cma20g00425 Cma-Chr20:2015300 Cma14g00246 Cma-Chr14:1065408 1.67E-06 dispersed
Cma14g00167 Cma-Chr14:673119 Cma20g00425 Cma-Chr20:2015300 1.52E-43 wgd
Cma20g00425 Cma-Chr20:2015300 Cma04g00226 Cma-Chr4:1093147 7.80E-44 wgd
Cma20g00425 Cma-Chr20:2015300 Cma04g01200 Cma-Chr4:6114568 1.02E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g395 . . . . . . Bma14g00490 . . . . . . . . Cpe05g00901 . . . . . . . . Cla02g01990 Cam02g2110 Cec02g2150 Cco02g2180 Clacu02g2097 . . . . . . . Csa06g01725 . Cme11g01269 . . . . . Bpe11g00777 . . Sed05g2941 Cmo02g00831 Cmo20g00463 . Cma20g00425 Car02g00597 Car20g00370 . . Bhi10g00666 Tan05g0358 Cmetu11g0841 . Hepe08g0810 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g00316 . 18 818 PHD Transcription Factor Family AT3G53680 53.2 3.6e-244 842.0
Cma14g00167 . 25 857 PHD Transcription Factor Family AT3G53680 52.1 2.3e-238 822.8
Cma04g00226 CST,ECH 438 564 PHD Transcription Factor Family AT3G53680 55.1 6.0e-37 153.7
Cma20g00425 . 312 450 PHD Transcription Factor Family AT3G53680 51.8 6.0e-37 153.7
Cma04g01200 CST,ECH 439 565 PHD Transcription Factor Family AT3G53680 54.3 3.0e-36 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004604 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 4 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00425 Cma_Chr20 FPKM 9.001545 7.478778 10.074724 10.513521 10.567373 9.677409 11.494215 14.836451 14.97657 17.643545