Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00425 ATGAGCAAAGGTTTTTGGATGACTAAGGGTCCTGGGCATGAAAATGATGCAAATTCAACTTTTGACAGCCCATCATTACTAGACACTAAGCGGGCACATCACTGGTTTATAGATGGTTGTGAAACACAGGTTTTCCCCAACAAGAAACAAGCAATTCAAGCTTCGAATAGTAAAATGACCGGAGCGCTGTCAAATGTGAATGTTCTTCCTTGGGATCATCATGCTGCTAATTATCAGTCTGTTTCACATCAACTTATCGGTCGCCTACTTGGACCTGAATCAATAAGGTCCGCTGACTTCGATCTAACAAAAGCATCTTCTGTAATGTCTGATAATTTGGATCTCAGGAGAAAAGGTATTGAAGTTGAAGAGCAATATGGAGAGGATGCATCTGTTGGGTTGTCTGTTTCTCATGGTTTGGAGGACCCTGAAACATGTCTTAGCTACGGAGGAATTAGAAAAGTTAAAGTCAATCAGATTAAAGATAATATACATGATCTGCAACCATGTCTAAGAAGTAATTCTAATAGGGAAGATGGTGGTCAACTTACCATAGAAGGCTACTATAAGGATATCGAAACAGGTCTTGTGTCTGTGGGATCAGCCTATATTAAGGAGGATGACAGTTTCAATTTGATGAACCAAACCTCCAATGATGGGGATCGCCACATTAGGTTACTAGGTCATAATGGGAAGGTGGTCGACAATGCTATCTCCGTCGGTGATGATTATGGTAAGCGGGATGCAAATATAATCTCATTTGACGGATTTCCCAATGAGCAAGATATTATCTCCTTAGGCAGGTCTCTGGGTAGCCATGACTCAACATTCTATGAACCTTCATTCCAAGCAACTGAAGCTGATGGTGTCACAGAATTGGAATCATCTAGTTTTGATGTAGGTGTAAGCAGTACACAGATAGCTAAGCAAAAGCCTGATACGATGCCGAAGAGTAGACCAGAATACAAAATGAGGAAAGAAGCTCCAAACAGCTTTCCTTCAAATGTTAGAAGCTTGATATCAACTGGTATGCTCGATGGCGTTCCTGTTAAGTACGTTTCTGTAGCCAGAGAGGAGCTTCGTGGAATTATAAGGGGATCTGGCTATCTTTGTGGATGCCAATCTTGCAACTTTTCCAAGATGCTTAATGCCTACGAGTTTGAGCGTCACGCTGGCTGCAAAACAAAACACCCAAATAATCATATATACTTTGAGAATGGGAAGACGATTTACCAAATAGTACAAGAATTAAGAAGCACCCCAGAGAGCTTGTTGTTTGATACAATTCAAACAATATTTGGTGCACCTATCAATCAGAAATCTTTTCGGATTTGGAAAGAATCATTTCAAGCAGCTACTCGTGAGCTTCAGCGCATATATGGTAAGGATGAACTTAACCTTTAG 1404 40.67 MSKGFWMTKGPGHENDANSTFDSPSLLDTKRAHHWFIDGCETQVFPNKKQAIQASNSKMTGALSNVNVLPWDHHAANYQSVSHQLIGRLLGPESIRSADFDLTKASSVMSDNLDLRRKGIEVEEQYGEDASVGLSVSHGLEDPETCLSYGGIRKVKVNQIKDNIHDLQPCLRSNSNREDGGQLTIEGYYKDIETGLVSVGSAYIKEDDSFNLMNQTSNDGDRHIRLLGHNGKVVDNAISVGDDYGKRDANIISFDGFPNEQDIISLGRSLGSHDSTFYEPSFQATEADGVTELESSSFDVGVSSTQIAKQKPDTMPKSRPEYKMRKEAPNSFPSNVRSLISTGMLDGVPVKYVSVAREELRGIIRGSGYLCGCQSCNFSKMLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTIFGAPINQKSFRIWKESFQAATRELQRIYGKDELNL 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2015300 2018149 - CmaCh20G004250.1 Cma20g00425 316239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00425 467 PANTHER DNA-BINDING PROTEIN 2 467 - -
Cma20g00425 467 MobiDBLite consensus disorder prediction 301 320 - -
Cma20g00425 467 MobiDBLite consensus disorder prediction 1 22 - -
Cma20g00425 467 PANTHER AUTOIMMUNE REGULATOR 2 467 - -
Cma20g00425 467 Pfam Tify domain binding domain 362 417 IPR032308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00312 Cma-Chr6:1478464 Cma20g00425 Cma-Chr20:2015300 1.22E-46 dispersed
Cma20g00425 Cma-Chr20:2015300 Cma14g00246 Cma-Chr14:1065408 1.67E-06 dispersed
Cma14g00167 Cma-Chr14:673119 Cma20g00425 Cma-Chr20:2015300 1.52E-43 wgd
Cma20g00425 Cma-Chr20:2015300 Cma04g00226 Cma-Chr4:1093147 7.80E-44 wgd
Cma20g00425 Cma-Chr20:2015300 Cma04g01200 Cma-Chr4:6114568 1.02E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00425 - - bhj:120089449 867.84