Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00441 ATGGATTGTAGTAGAAGATTTGGATTACTGTTCTGGATTTTGTTCATTTCGTTGCTGCCGTGCATTTCTTGTTTGTTTAATCCGGTAGATAATTATCTTATTGACTGTGGATCGCCGGCTAATGTATCTGTGGGTAATCGTGTTTTCATGGCCGATAATTTGGCCTCCAAGTTGCTTTCCACCCCAAAAGTCATTCTGGCTAATACGTCTTCAGTGCCTGCCAGTTCTTCTAATGATTCGTCGCTGTTTGGAACGGCTAGAATCTTCACTGAATCATCAAAATTCAAGTTTCCAATTAAGGCTGGAAGGCACTGGATCCGTCTCTATTTCTATCCATTTGTGTTTCCTGGCTTCAATATGAGTGCTGCAAATTTTAGTGTTTCGACCCAAAATTTTGTTCTGCTGCGAGATTTAGTTGCTGTGAAGAATCCTGTAGTCAAAGAGTTCTCTGTTAACGTAGCTTCAGATACTCTTGAAGTTATATTTACTCCTGTTAATGGCTCCTTTGCATATGTGAATGCCATTGAAGTTACTTCTGTTCCTGACATTCTCATCACTGATGAAGCCAGTTTGCTAGAACCGTCTGGTAAATTCGACGGGCTATCTGCTCTGGCATATGAGACAGTTGCTAGGGTTAATATGGGTGGGCCAAAGGTTTCTCCAGATAATGATCCTCTCGCGCGGAGTTGGGTTCCTGATGAGAGCTTTCTAGTTAATAAGAATTCTGCAATAAGTTTCTCTAACATTGCAGCTGTTAAATACAATGATGATGGGGCAGCTCCAGAGATTGCTCCAAATGTTGTCTACGGTACCCTAACCGAGATGAACTCGAAGGATGATCCAAGCAGTAATTTCAATGTGACATGGCGATTTAAAGTGGACCCGGAGTTTCAGTACCTTGTTCGGTTTCACTTCTGTGACATTGTGAGCAAAGCTCTACACCAACTTTATTTCAATGTTTACGTTGACTCATGGTTGGTCGCTCGGGATTTAGATCTTAGTATTCCTCTTAACAATGCTCTGGGCACTCCTTACTATATGGACGCTGTTACAGGATTGATCAAGAATGACATACTTCTTGTGAGCATTGGCCCAGCAAATTTAGCCAATGTGTATCCAAATGCCATTCTAAATGGTCTGGAAATCATGAAAATGAACAACTCAGTTGGCAGTCTTAGTGGGGAAGACTCTGTAATTAGTTTTCTGAACTCGACTTCTTCCAATAAGCACATTGGCTTGATTGTGGGCGTAACCGTTGGTGCATTTGTTGCAGCTATGTTGATTGCCGTTCTGTTTATACTGAATAGACGAAGAAGAAAGGGAATGCATCAAGCTCCATCAAAAACATGGATTTCAATATCAACTGCTGGAGGAATGTCACACACTATGGGAAGTAAATACTCAAATGGCACTATCACAAGTGCTGCTTCCAACTATGGATATCGTATACCGTTCGCAACAGTTCAAGAGGCTACAAATAACTTCGATGAGAGCTGGGTTATTGGTATTGGAGGGTTTGGGAAAGTATACAAAGGAGTTTTAAATGATGGCACCAAAGTTGCTGTGAAGAGGGGTAACCCACGTTCCCAACAAGGACTGGCAGAGTTTCAAACTGAAATCGAGATGCTATCACAGTTCCGTCATCGTCATCTTGTATCATTGATTGGATACTGTGATGAGAGGAATGAGATGATACTGATTTATGAATATATGGAGCAGGGGACCCTGAAGAGCCATCTATATGGTTCTGATTTCCCTAGTTTGAGCTGGAAGGAGAGATTAGAGGTCTGCATTGGAGCCGCTAGAGGACTTCATTACCTCCACACTGGTTATGCTAAACCAGTTATTCATCGTGATGTCAAGTCTGCTAATATTTTACTCGATGAAACGCTCATGGCAAAGGTCGCTGACTTTGGGCTTTCAAAGACAGGGCCTGAAATTGACCAAACCCATGTTAGTACGGCCGTGAAAGGAAGTTTCGGGTACCTCGATCCCGAATATTTCAGGAGGCAACAACTGACTGAGAAATCAGATGTTTATTCTTTTGGAGTTGTTCTGTTTGAAGTCCTTTGTGCAAGACCTGTCATAGATCCAACCCTTCCAAGAGAAATGGTAAACTTAGCTGAATGGGCAATGAAATGGCAGAAGAAAGGGCAGTTGGACCAAATCATTGATCCTACTCTAGTGGGAAAAATTAGACCAACTTCTCTTAGGAAGTTTGGAGAAACTGCTGAAAAATGCTTGGCTGACTATGGAGTCGACAGGCCATCTATGGGAGACGTATTATGGAACTTGGAGTATGCACTTCAGCTACAAGAAGCTGTCGTTGAAGTCGATCCTGAAGATAACAGTACAAATATGATCGGTGAGCTCTCTCCACAGATTAACAATTTCAACGACGTTGAGGCAGGTGTTTCCGCCACACGGTTTGACATTCCGGGTGTGGATGATCTCTCGGGAGTCTCCATGAGTAGGGTGTTCTCTCAGCTGGTGAAGTCTGAAGAAGGAGTTTTATGCAGGCGAGTCTTTGCAATATCCATCAAACATGTTACTTCTTTAACGAACAAGTTGAGTTATCCTGGCAATGTCGACGACCATGGTGTGCCATTCTTTTCTGAATCCGTTTGGGAGCGGTGTCGAGGCGCTTTGTCGTTTATGTGTTTAGCTCTGAACCTCTTTTTGTTGGAGCATGTATTTGCTGCAATTTATAGAGTTACAGAGCTCTACAACGTTTCAGTCTCATTTCTGCTTGAACACTGTGCTTCTTCAATTCAAAGCTCTTTCATCATCGCCATGGGTTTCTTCGACCTCAACATACCTTACGACGAGCATTCATCATCATCATCTTCGTCTTCTTCTTCAAGTAGGAATCGCATCAGGATTGTGGCCAAACTCATGGAGCTCGGCTACTCTGGTATTGCCTACAACCGTACAGTCAAAGGAGTGATGTCCGATCGAGATCGTTGTTCTATTCCCCTCCTCAACGTTTCATCTCTTCACAGTATCCTTCCATCCTTCTCCGCCTCCGTAGAGTTCCATCGGGATCTCCTCGGCGTCCCACGGTCCTCTCGTTTCCGGCAGTACACGCGTCTTACTATTTCTGTTAACAGTTTGCACGAGGTTATGGCTGTCAATTCTGACAACCTTATTCTGAAGACCTACGATTTGATTGCTGTGAAGCCTCATAATCAGTATTCTTTCGAGCAGGCTTGCGAGAAATTGGAGATAGATATAATTGCCATTGATTTTGCGGAGAAACTTCCTTTTAGCTTGAAGCAAGGAACGATTAAATCTGCAATTCAGCGTGGAGTTTACTTCGAAATCATGTACTCTGATCTCCTTTCCGATGTTCATGATAGGAGGCAAACAATATCCGCTGCTAAGATCTTGGTGGATTGGACTAAAGGAAAGAATCTCATATTATCCAGTGCTGCCCCCTCTGTAAATGAAATCAGAGGACCTTACGATGTTGCAAACTTGTCATCATTGCTAGGTGTCTCTATGGAATGCGCAAAAGCTGCTGTTTCAAAAAACAGTAGGAATCTTATAGCTAATGCTCTAAAGAGAAAGCAATTCTACAAGGAAACCATTCCAGTTGAAAGGATATCATCAGATGATAAATTAGATCTGAATGACCCTTTGTCAGCGGATTTGTTCAAATGGGATCCTATATCAGGTGGTGCAGGTGATTTTTTATTGGATGATATAGCAAAATCTTTTGCTGCCTCTAATGAAAAATTGGGAGGTGTGAAAGCCATTGACTTCAATTCAGTCATTGACGACGTGCCACCACAAGGTTTCCTAGTCAAGAATGTAATATCAGGCTCCAAGGCAAAACTGTTGTCGAATGAGAAAGGCAAAAGCATTGTTGAAGAAATTGCGCAGCCAAAGACCTCAAAGCTGGAAGAACCTATTGAAATGGACATTGATAACGTGCAATTGAAAAACCCACTACCCAGTAGCGTATTAAGTGCAGTATCAGCAAATGAGCTTCTGAATTCTCCTACATCTACCAGAGATGTATCAGCTGTAGTTTTCGGAAATGACAGAAAAGAAATTTCTAAAATGGAGGCTGTTGATTCTCATCAGTATGAATATGGTCTAAAAAGTTCTGATATATTGACTGGTTCAGAAAATATATTGAGGGACAAAACTTCTACTAATTTGGTTTCAGAAGATCAAAAGAATGTGATAATGGACGGTACATTTACAGCTGAGGAATGTTTACTTGATGCAAGACTTGGGAAGCCTGGGGATGTGGCAATGGCTGATTGTCAGGTTTCTCCTCTTGGTTTGAAAGATGATCATTTGATCTCGATTCGACAACAAACATCTGAGGTGTTAATGGAAGAGCAGAATAGTGGAGAAGCTGATCCAGAGATCACACAACCACCTTCCGATCAGTAG 4407 42.18 MDCSRRFGLLFWILFISLLPCISCLFNPVDNYLIDCGSPANVSVGNRVFMADNLASKLLSTPKVILANTSSVPASSSNDSSLFGTARIFTESSKFKFPIKAGRHWIRLYFYPFVFPGFNMSAANFSVSTQNFVLLRDLVAVKNPVVKEFSVNVASDTLEVIFTPVNGSFAYVNAIEVTSVPDILITDEASLLEPSGKFDGLSALAYETVARVNMGGPKVSPDNDPLARSWVPDESFLVNKNSAISFSNIAAVKYNDDGAAPEIAPNVVYGTLTEMNSKDDPSSNFNVTWRFKVDPEFQYLVRFHFCDIVSKALHQLYFNVYVDSWLVARDLDLSIPLNNALGTPYYMDAVTGLIKNDILLVSIGPANLANVYPNAILNGLEIMKMNNSVGSLSGEDSVISFLNSTSSNKHIGLIVGVTVGAFVAAMLIAVLFILNRRRRKGMHQAPSKTWISISTAGGMSHTMGSKYSNGTITSAASNYGYRIPFATVQEATNNFDESWVIGIGGFGKVYKGVLNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEQGTLKSHLYGSDFPSLSWKERLEVCIGAARGLHYLHTGYAKPVIHRDVKSANILLDETLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKKGQLDQIIDPTLVGKIRPTSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVEVDPEDNSTNMIGELSPQINNFNDVEAGVSATRFDIPGVDDLSGVSMSRVFSQLVKSEEGVLCRRVFAISIKHVTSLTNKLSYPGNVDDHGVPFFSESVWERCRGALSFMCLALNLFLLEHVFAAIYRVTELYNVSVSFLLEHCASSIQSSFIIAMGFFDLNIPYDEHSSSSSSSSSSSRNRIRIVAKLMELGYSGIAYNRTVKGVMSDRDRCSIPLLNVSSLHSILPSFSASVEFHRDLLGVPRSSRFRQYTRLTISVNSLHEVMAVNSDNLILKTYDLIAVKPHNQYSFEQACEKLEIDIIAIDFAEKLPFSLKQGTIKSAIQRGVYFEIMYSDLLSDVHDRRQTISAAKILVDWTKGKNLILSSAAPSVNEIRGPYDVANLSSLLGVSMECAKAAVSKNSRNLIANALKRKQFYKETIPVERISSDDKLDLNDPLSADLFKWDPISGGAGDFLLDDIAKSFAASNEKLGGVKAIDFNSVIDDVPPQGFLVKNVISGSKAKLLSNEKGKSIVEEIAQPKTSKLEEPIEMDIDNVQLKNPLPSSVLSAVSANELLNSPTSTRDVSAVVFGNDRKEISKMEAVDSHQYEYGLKSSDILTGSENILRDKTSTNLVSEDQKNVIMDGTFTAEECLLDARLGKPGDVAMADCQVSPLGLKDDHLISIRQQTSEVLMEEQNSGEADPEITQPPSDQ 1468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2089714 2096450 + CmaCh20G004410.1 Cma20g00441 316255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00441 1468 ProSiteProfiles Protein kinase domain profile. 495 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00441 1468 CDD STKc_IRAK 501 766 - -
Cma20g00441 1468 Gene3D - 204 387 - -
Cma20g00441 1468 Gene3D - 31 180 - -
Cma20g00441 1468 Gene3D - 1021 1185 - -
Cma20g00441 1468 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524
Cma20g00441 1468 Gene3D Transferase(Phosphotransferase) domain 1 571 788 - -
Cma20g00441 1468 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 19 827 - -
Cma20g00441 1468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Cma20g00441 1468 Pfam RNase P subunit p30 935 1178 IPR002738 GO:0008033
Cma20g00441 1468 MobiDBLite consensus disorder prediction 1446 1468 - -
Cma20g00441 1468 Pfam Protein tyrosine and serine/threonine kinase 500 692 IPR001245 GO:0004672|GO:0006468
Cma20g00441 1468 PANTHER OS07G0166700 PROTEIN 19 827 IPR045272 GO:0004714|GO:0006468
Cma20g00441 1468 SUPERFAMILY Protein kinase-like (PK-like) 472 766 IPR011009 -
Cma20g00441 1468 SUPERFAMILY PHP domain-like 933 1183 IPR016195 -
Cma20g00441 1468 Pfam Malectin-like domain 34 385 IPR024788 -
Cma20g00441 1468 SMART serkin_6 495 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00441 1468 Gene3D Phosphorylase Kinase; domain 1 458 570 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00844 Cma20g00441 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01189 Cma-Chr1:8611981 Cma20g00441 Cma-Chr20:2089714 0 dispersed
Cma08g00891 Cma-Chr8:5518087 Cma20g00441 Cma-Chr20:2089714 5.26E-72 dispersed
Cma09g00890 Cma-Chr9:4385407 Cma20g00441 Cma-Chr20:2089714 0 dispersed
Cma16g00104 Cma-Chr16:465761 Cma20g00441 Cma-Chr20:2089714 0 dispersed
Cma17g00823 Cma-Chr17:6448674 Cma20g00441 Cma-Chr20:2089714 0 dispersed
Cma18g01264 Cma-Chr18:9840380 Cma20g00441 Cma-Chr20:2089714 0 dispersed
Cma02g00846 Cma-Chr2:4943135 Cma20g00441 Cma-Chr20:2089714 0 transposed
Cma02g00844 Cma-Chr2:4933801 Cma20g00441 Cma-Chr20:2089714 0 wgd
Cma20g00441 Cma-Chr20:2089714 Cma04g00249 Cma-Chr4:1216602 0 wgd
Cma20g00441 Cma-Chr20:2089714 Cma04g01222 Cma-Chr4:6235585 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69387 PF12819 Malectin_like 9.30E-32 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00441 - - csv:101218488 1493.4