Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00451 ATGGGATGCTTTCGCCACAGCAAAAAACAGAGGAAAAAATTCGAGATCAATTCACCCATTTCTTCAGTCAAAGTAGAAGCGGATTTGAAGGTAGAAACACGGGAAGAAGTAAAAGAGCAGACTCGTGAAAATGACCAGCTGGCGTCAAATATAAACAGAGAGGTTTCCGGTAAAGTAAAAACGAACGAAGAGATAGAAAAATTTACCTTCCACGAACTTGTAGAAGCAACGAGAAATTTCAAGTCAGATTGCTTTCTGGGTGAAGGAGGCTTCGGTAAAGTTTACAAGGGTCATTTGATAAGAATCGACCAGGTTGTAGCTATAAAACAACTCGACCGGAATGGGCTTCAAGGGGTAAGAGAATTCGTGGTGGAAGTATTGACATTAAGTTTGGCCGATCACCCAAATCTTGTAAAATTGTTAGGATATTGCGCAGAACGAGATGAACGACTTTTGGTTTATGAGTTCATGCCATTAGGCTCATTGGACAAACATTTACACGATCTTCCACCTGGCAAAAATGTGCTTGATTGGAATACGAGAATGAAGATAGCCGTGGGCGCAGCGAGAGGGTTGGAGTATTTGCACAACAAAATGAGGCCAGCAGTTATATATAGAGATCTAAAATGCTCGAACATTTTGCTGGGAGAAGGGTATTGGCCAAAGCTCTCGGATTTTGGGTTAGCCAAAGTGGGTCCAAGTGGAGATAACACCCACGTTTCTACTAGAGTCATGGGAACCTATGGATATTGTGCTCCTGATTACGCAATGACAGGCCAATTGACATTCAAATGCGATATCTATAGCTTTGGAGTTGTTCTCTTGGAGCTCATCACGGGAAGGAAAGTCATCGACTATACAAGACCTCCGAAGGAACTGAGTTTGGTGACATGGGCAAAACCATTATTCCGAGATCGAAAGAGGTTCTTAACAATGGTGGACCCGAGGCTCGATGGTCAATTTCCTGTAAGAGGATTGTATCAAGCTCTTGCCATTGCAGCCATGTGTGTGCAGGAGCAACCAACTCAGAGGCCAGTGATTTCAGAAGTGCAGAGATCTTCGACTTCGAGTTCGTTCCGAGCAACAACTGACGATCATTGTAGCATAATCTTCAGCCCGGCACAAGAGCCACAAGGAAGATGCTCTCCAGAAATAAGATCAATGGACGATTCCAGCGGCAGCTTTCTTCCAGTTTCCGATCCTTCGTGTCGGAAGCGAGATCACAATTCGCGATACAAATTCTCGGAGAGGTGGATTCATTTGATTCCTTTGATTCTGCTCCTCGTCCTCTTCATTCTCTGGTGGTCATCTTATCCAGTTTCTTGCCTCCTCTGTCCAGTAATTTGTAAATCGTTTTTTTCCCCTGCGAATGCAGTGAATTTGGTGATCAAGGATGGAGGAATTAAAGCAGTTTATGCAAGTGAGTTTCCGGAGGCGCCGAAGTACATTGATCATGTCGAACTTGCCATTTTAGGAGATGCCGGAATGCAGATTGCTTCGAGTCCTCTGAATCTAACCAGCGTTGGCGCTCGAGATTTACGGACACCGGGCGCTTTTAAAAAGTCCCGTTTTCTCCGTTCTCCCCACCGCCGCTCTTCTCCGCTTCTTCCAATTCTTTTGACCCTCCAATCTCTCCCTTCCACTTTCAACCAGCTTTCTCCGAGAGACCTAATGGAACCGTTGGATAAACCAGCGTCAAACTCCTCGCCTCTCGCGCCATTTCCTCGGGACGCGCGAGGATCGCTAGAGGTTTTCAATCCCTCGGCCACGTACTCATCCCATTCGATCAACTCCATTTCTCGAGCGAACCCAACGTGCCCCAGTTGGGCGGAGCCGGACTCGGCCAAACTCGCCGCTAAACCGTCGAGTAAAACCGGCGACGAGATAACGTCATGGATGGCCTTCAAGGACTCAAACGCTCCACCACAACCTTCATCGCCGGTCGTCCAGAAAACCATCTCGGCGATTCTCAGCGACAAACCGCCGTCAGAAAAGCCGCAATCGGCGGACGAAGTCGGCTCCGCAGCTTTACGCGCTGCCGAGTGGGGATTGGTACTGAAAACCGATACGGAGACGGGAAAGCCTCAAGGAGTCGGAGTTCGAACTTCCGGCGGCGATGAACCGAATATCAAACAAGAGAATTCGAGGAGAGCTTCCAATAACTCGGTGCGAAGTTCGGGCGACATGTCGGAAGAAGGGGGAAGAGAAAGGGGGTTTCCTAGAGTCTCCGAGGATTTGAAAGACGCTCTGTCGACTTTTCAACAAACATTCGTGGTTTCTGATGCTACGAAACCTGATTATCCGATTATGTACGCCAGCGCCGGATTCTTCAAAATGACCGGCTATACCTCCAAGGAAGTCATCGGAAGAAACTGGGTGCAGACACAGACCCTGAAGATGTGGCCAAGATCCGGGAGGGTTTACAAGCTGGGACGAGTTACTGTGGGAGCACGTCAGAAGGAGATGGCTACCAGCTCGGTAACGGAGCTTGTGCAGGCGGTGAAAAGGCCTCGGTCTCTAAGTGAGTCTAGGCCTCGGGCTCTAAGTGAATCTATGAACCGTCGGCTATTTAGAAAATCCGGCGGCGGCGGCGGCGGTGATAATGACGGCGACAGATTTGAAACTGGTATGGTTAGGCGAAAGTCAGAGAGCGCTGCAGCTTCAACTGGACGAGGAAGTCGAAGGTCGATGCGGCGTATCAATGAGGTTCCCGACAAGAAACCCAAGAAGTCTAGCCGTCGTTCATTTATGGGGATTATGAGGAAAAGTCAATCAAATGTTGATAGCATCGACGTTGAAGATGGTTCCGATGATGATAACGACACCGATGACGACGATAGACCAGATAGTGTCGACGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATTGATTTAGCTACCACCCTCGAACGTATAGAGAAAAACTTCGTCATTACCGATCCTAGATTGCCCGACAATCCCATTATCTTTGCTTCTGATAGCTTCCTGGAGCTAACCGAATTTCTGCAAGGTCCCGAAACCGATCGAGCGACCGTCAAGAAAATAAGAGATGCCATCGACAATCAAACCGAAGTTACCGTGCAGCTTATTAACTACACAAAAAGTGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGAGAAGTTCAGTATTTCATTGGAGTTCAACTCGATGGTAGTCAGCATGTCGAACCACTAAGCAATTGCATACCGGAAACTACTGCGAAGCACGGCGAAAAATTGATAAAAGAAACTGCAGAAAATGTTGATTTGGCAGCTCGAGAACTTCCCGACGCCAATTTGACACCAGAAGATTTATGGGCAAATCATTCTAAGATGGTTCAACCTAAACCTCACAGAAAGGACAGTCCTTCCTGGAAAGCTATCCAGAAGATTTTAGACAGCGGAGAACAGATAGAACTGAAACATTTCAAGCCAGTTAAACCTTTGGGATCTGGCGATACTGGCAGCGTGCATTTGGTAGAACTGTGTGGAACTGATCAATTTTTTGCAATGAAGGCAATGGATAAGGGTGTAATGCTCAACCGTAACAAGGTTTTGAATACATTTTCATTGGTTCATGTTAGAAATTCTATTACGTTTCACTTGGCTTTCGGGATAATTTACCGGGATCTGAAGCCCGAGAATGTTCTACTACAAGGTAATGGACACGTTGCCTTGACGGATTTTGACTTGTCATGTTTGACGTCTTGTAAACCTCAGCTTTTGCTTCCAACAACAAATGAGAAGAAAAAACAATCAAGAGCTCAACAGGCTCCCGTCTTTATGGCCGAACCTATGCGAGCATCGAACTCCTTTGTCGGAACCGAAGAGTACATAGCACCGGAAATTATTACTGGGGCTGGCCATACCAGTGCAGTGGACTGGTGGGCTTTGGGTATCCTTCTATATGAGATGCTCTATGGTTACACACCCTTTAGAGGGAAGACAAGGCAAAAGACTTTCGCTAACATTCTTCACAAGGATCTTAAGTTTCCAAGAAGTTACTGCATAGAGACGCCAAAAACCGATTGGGTTCTCGAGAAGGAGCAAATGAAATCAAACGACATCCTTTCTTCCGAGGCGTTAATTGGGCGCTCGTTCGATGCATGCATCCTCCCGAGCTCGAAGCGTCTCTTTTCCAGTCCGTCGAACCCGAAAAAGATGCTAATAATAAAGCTCCAGTTTTGGATGTAA 4218 46.85 MGCFRHSKKQRKKFEINSPISSVKVEADLKVETREEVKEQTRENDQLASNINREVSGKVKTNEEIEKFTFHELVEATRNFKSDCFLGEGGFGKVYKGHLIRIDQVVAIKQLDRNGLQGVREFVVEVLTLSLADHPNLVKLLGYCAERDERLLVYEFMPLGSLDKHLHDLPPGKNVLDWNTRMKIAVGAARGLEYLHNKMRPAVIYRDLKCSNILLGEGYWPKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPDYAMTGQLTFKCDIYSFGVVLLELITGRKVIDYTRPPKELSLVTWAKPLFRDRKRFLTMVDPRLDGQFPVRGLYQALAIAAMCVQEQPTQRPVISEVQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSFLPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVSCLLCPVICKSFFSPANAVNLVIKDGGIKAVYASEFPEAPKYIDHVELAILGDAGMQIASSPLNLTSVGARDLRTPGAFKKSRFLRSPHRRSSPLLPILLTLQSLPSTFNQLSPRDLMEPLDKPASNSSPLAPFPRDARGSLEVFNPSATYSSHSINSISRANPTCPSWAEPDSAKLAAKPSSKTGDEITSWMAFKDSNAPPQPSSPVVQKTISAILSDKPPSEKPQSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNIKQENSRRASNNSVRSSGDMSEEGGRERGFPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNWVQTQTLKMWPRSGRVYKLGRVTVGARQKEMATSSVTELVQAVKRPRSLSESRPRALSESMNRRLFRKSGGGGGGDNDGDRFETGMVRRKSESAAASTGRGSRRSMRRINEVPDKKPKKSSRRSFMGIMRKSQSNVDSIDVEDGSDDDNDTDDDDRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIPETTAKHGEKLIKETAENVDLAARELPDANLTPEDLWANHSKMVQPKPHRKDSPSWKAIQKILDSGEQIELKHFKPVKPLGSGDTGSVHLVELCGTDQFFAMKAMDKGVMLNRNKVLNTFSLVHVRNSITFHLAFGIIYRDLKPENVLLQGNGHVALTDFDLSCLTSCKPQLLLPTTNEKKKQSRAQQAPVFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSYCIETPKTDWVLEKEQMKSNDILSSEALIGRSFDACILPSSKRLFSSPSNPKKMLIIKLQFWM 1405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2135318 2152071 - CmaCh20G004510.1 Cma20g00451 316265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00451 1405 MobiDBLite consensus disorder prediction 836 958 - -
Cma20g00451 1405 MobiDBLite consensus disorder prediction 686 740 - -
Cma20g00451 1405 PANTHER PHOTOTROPIN-1 1212 1343 - -
Cma20g00451 1405 Gene3D Phosphorylase Kinase; domain 1 40 156 - -
Cma20g00451 1405 PANTHER PHOTOTROPIN-1 816 1193 - -
Cma20g00451 1405 Coils Coil 30 50 - -
Cma20g00451 1405 Pfam Protein kinase domain 85 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00451 1405 Pfam Protein kinase domain 1208 1340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00451 1405 MobiDBLite consensus disorder prediction 553 575 - -
Cma20g00451 1405 SUPERFAMILY Protein kinase-like (PK-like) 1149 1343 IPR011009 -
Cma20g00451 1405 MobiDBLite consensus disorder prediction 931 948 - -
Cma20g00451 1405 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Cma20g00451 1405 MobiDBLite consensus disorder prediction 839 853 - -
Cma20g00451 1405 Gene3D Phosphorylase Kinase; domain 1 1140 1204 - -
Cma20g00451 1405 ProSiteProfiles Protein kinase domain profile. 80 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00451 1405 PANTHER FLIPPASE KINASE 1-RELATED 1212 1343 - -
Cma20g00451 1405 SMART pac_2 1027 1069 IPR001610 -
Cma20g00451 1405 SMART serkin_6 80 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00451 1405 SMART serkin_6 1151 1405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00451 1405 PANTHER PHOTOTROPIN-1 80 229 - -
Cma20g00451 1405 Gene3D PAS domain 950 1103 - -
Cma20g00451 1405 ProSiteProfiles PAC domain profile. 1024 1078 IPR000700 -
Cma20g00451 1405 PANTHER FLIPPASE KINASE 1-RELATED 80 229 - -
Cma20g00451 1405 Gene3D Transferase(Phosphotransferase) domain 1 1205 1391 - -
Cma20g00451 1405 CDD STKc_IRAK 86 352 - -
Cma20g00451 1405 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 801 IPR035965 -
Cma20g00451 1405 ProSiteProfiles Protein kinase domain profile. 996 1405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00451 1405 MobiDBLite consensus disorder prediction 714 728 - -
Cma20g00451 1405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1214 1226 IPR008271 GO:0004672|GO:0006468
Cma20g00451 1405 Gene3D PAS domain 738 861 - -
Cma20g00451 1405 SUPERFAMILY Protein kinase-like (PK-like) 64 379 IPR011009 -
Cma20g00451 1405 SUPERFAMILY PYP-like sensor domain (PAS domain) 978 1065 IPR035965 -
Cma20g00451 1405 PANTHER FLIPPASE KINASE 1-RELATED 691 792 - -
Cma20g00451 1405 MobiDBLite consensus disorder prediction 895 912 - -
Cma20g00451 1405 PANTHER FLIPPASE KINASE 1-RELATED 816 1193 - -
Cma20g00451 1405 Pfam PAS domain 763 796 IPR000014 -
Cma20g00451 1405 Pfam PAS domain 985 1065 IPR000014 -
Cma20g00451 1405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Cma20g00451 1405 Gene3D Transferase(Phosphotransferase) domain 1 157 370 - -
Cma20g00451 1405 CDD PAS 977 1065 IPR000014 -
Cma20g00451 1405 PANTHER PHOTOTROPIN-1 691 792 - -
Cma20g00451 1405 ProSiteProfiles PAS repeat profile. 742 793 IPR000014 -
Cma20g00451 1405 ProSitePatterns Protein kinases ATP-binding region signature. 1157 1180 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00451 Cma-Chr20:2135318 Cma20g00692 Cma-Chr20:3167759 9.03E-06 dispersed
Cma13g00169 Cma-Chr13:1291866 Cma20g00451 Cma-Chr20:2135318 6.06E-173 wgd
Cma14g00183 Cma-Chr14:761708 Cma20g00451 Cma-Chr20:2135318 3.65E-144 wgd
Cma02g00853 Cma-Chr2:4972923 Cma20g00451 Cma-Chr20:2135318 1.76E-10 wgd
Cma20g00451 Cma-Chr20:2135318 Cma04g00257 Cma-Chr4:1266414 3.13E-150 wgd
Cma20g00451 Cma-Chr20:2135318 Cma04g01234 Cma-Chr4:6306340 4.66E-148 wgd
Cma20g00451 Cma-Chr20:2135318 Cma06g00343 Cma-Chr6:1593759 3.50E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69388 PF00069 Pkinase 4.80E-40 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00451 K20715 - csin:114287068 660.218