Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g00451 | ATGGGATGCTTTCGCCACAGCAAAAAACAGAGGAAAAAATTCGAGATCAATTCACCCATTTCTTCAGTCAAAGTAGAAGCGGATTTGAAGGTAGAAACACGGGAAGAAGTAAAAGAGCAGACTCGTGAAAATGACCAGCTGGCGTCAAATATAAACAGAGAGGTTTCCGGTAAAGTAAAAACGAACGAAGAGATAGAAAAATTTACCTTCCACGAACTTGTAGAAGCAACGAGAAATTTCAAGTCAGATTGCTTTCTGGGTGAAGGAGGCTTCGGTAAAGTTTACAAGGGTCATTTGATAAGAATCGACCAGGTTGTAGCTATAAAACAACTCGACCGGAATGGGCTTCAAGGGGTAAGAGAATTCGTGGTGGAAGTATTGACATTAAGTTTGGCCGATCACCCAAATCTTGTAAAATTGTTAGGATATTGCGCAGAACGAGATGAACGACTTTTGGTTTATGAGTTCATGCCATTAGGCTCATTGGACAAACATTTACACGATCTTCCACCTGGCAAAAATGTGCTTGATTGGAATACGAGAATGAAGATAGCCGTGGGCGCAGCGAGAGGGTTGGAGTATTTGCACAACAAAATGAGGCCAGCAGTTATATATAGAGATCTAAAATGCTCGAACATTTTGCTGGGAGAAGGGTATTGGCCAAAGCTCTCGGATTTTGGGTTAGCCAAAGTGGGTCCAAGTGGAGATAACACCCACGTTTCTACTAGAGTCATGGGAACCTATGGATATTGTGCTCCTGATTACGCAATGACAGGCCAATTGACATTCAAATGCGATATCTATAGCTTTGGAGTTGTTCTCTTGGAGCTCATCACGGGAAGGAAAGTCATCGACTATACAAGACCTCCGAAGGAACTGAGTTTGGTGACATGGGCAAAACCATTATTCCGAGATCGAAAGAGGTTCTTAACAATGGTGGACCCGAGGCTCGATGGTCAATTTCCTGTAAGAGGATTGTATCAAGCTCTTGCCATTGCAGCCATGTGTGTGCAGGAGCAACCAACTCAGAGGCCAGTGATTTCAGAAGTGCAGAGATCTTCGACTTCGAGTTCGTTCCGAGCAACAACTGACGATCATTGTAGCATAATCTTCAGCCCGGCACAAGAGCCACAAGGAAGATGCTCTCCAGAAATAAGATCAATGGACGATTCCAGCGGCAGCTTTCTTCCAGTTTCCGATCCTTCGTGTCGGAAGCGAGATCACAATTCGCGATACAAATTCTCGGAGAGGTGGATTCATTTGATTCCTTTGATTCTGCTCCTCGTCCTCTTCATTCTCTGGTGGTCATCTTATCCAGTTTCTTGCCTCCTCTGTCCAGTAATTTGTAAATCGTTTTTTTCCCCTGCGAATGCAGTGAATTTGGTGATCAAGGATGGAGGAATTAAAGCAGTTTATGCAAGTGAGTTTCCGGAGGCGCCGAAGTACATTGATCATGTCGAACTTGCCATTTTAGGAGATGCCGGAATGCAGATTGCTTCGAGTCCTCTGAATCTAACCAGCGTTGGCGCTCGAGATTTACGGACACCGGGCGCTTTTAAAAAGTCCCGTTTTCTCCGTTCTCCCCACCGCCGCTCTTCTCCGCTTCTTCCAATTCTTTTGACCCTCCAATCTCTCCCTTCCACTTTCAACCAGCTTTCTCCGAGAGACCTAATGGAACCGTTGGATAAACCAGCGTCAAACTCCTCGCCTCTCGCGCCATTTCCTCGGGACGCGCGAGGATCGCTAGAGGTTTTCAATCCCTCGGCCACGTACTCATCCCATTCGATCAACTCCATTTCTCGAGCGAACCCAACGTGCCCCAGTTGGGCGGAGCCGGACTCGGCCAAACTCGCCGCTAAACCGTCGAGTAAAACCGGCGACGAGATAACGTCATGGATGGCCTTCAAGGACTCAAACGCTCCACCACAACCTTCATCGCCGGTCGTCCAGAAAACCATCTCGGCGATTCTCAGCGACAAACCGCCGTCAGAAAAGCCGCAATCGGCGGACGAAGTCGGCTCCGCAGCTTTACGCGCTGCCGAGTGGGGATTGGTACTGAAAACCGATACGGAGACGGGAAAGCCTCAAGGAGTCGGAGTTCGAACTTCCGGCGGCGATGAACCGAATATCAAACAAGAGAATTCGAGGAGAGCTTCCAATAACTCGGTGCGAAGTTCGGGCGACATGTCGGAAGAAGGGGGAAGAGAAAGGGGGTTTCCTAGAGTCTCCGAGGATTTGAAAGACGCTCTGTCGACTTTTCAACAAACATTCGTGGTTTCTGATGCTACGAAACCTGATTATCCGATTATGTACGCCAGCGCCGGATTCTTCAAAATGACCGGCTATACCTCCAAGGAAGTCATCGGAAGAAACTGGGTGCAGACACAGACCCTGAAGATGTGGCCAAGATCCGGGAGGGTTTACAAGCTGGGACGAGTTACTGTGGGAGCACGTCAGAAGGAGATGGCTACCAGCTCGGTAACGGAGCTTGTGCAGGCGGTGAAAAGGCCTCGGTCTCTAAGTGAGTCTAGGCCTCGGGCTCTAAGTGAATCTATGAACCGTCGGCTATTTAGAAAATCCGGCGGCGGCGGCGGCGGTGATAATGACGGCGACAGATTTGAAACTGGTATGGTTAGGCGAAAGTCAGAGAGCGCTGCAGCTTCAACTGGACGAGGAAGTCGAAGGTCGATGCGGCGTATCAATGAGGTTCCCGACAAGAAACCCAAGAAGTCTAGCCGTCGTTCATTTATGGGGATTATGAGGAAAAGTCAATCAAATGTTGATAGCATCGACGTTGAAGATGGTTCCGATGATGATAACGACACCGATGACGACGATAGACCAGATAGTGTCGACGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATTGATTTAGCTACCACCCTCGAACGTATAGAGAAAAACTTCGTCATTACCGATCCTAGATTGCCCGACAATCCCATTATCTTTGCTTCTGATAGCTTCCTGGAGCTAACCGAATTTCTGCAAGGTCCCGAAACCGATCGAGCGACCGTCAAGAAAATAAGAGATGCCATCGACAATCAAACCGAAGTTACCGTGCAGCTTATTAACTACACAAAAAGTGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGAGAAGTTCAGTATTTCATTGGAGTTCAACTCGATGGTAGTCAGCATGTCGAACCACTAAGCAATTGCATACCGGAAACTACTGCGAAGCACGGCGAAAAATTGATAAAAGAAACTGCAGAAAATGTTGATTTGGCAGCTCGAGAACTTCCCGACGCCAATTTGACACCAGAAGATTTATGGGCAAATCATTCTAAGATGGTTCAACCTAAACCTCACAGAAAGGACAGTCCTTCCTGGAAAGCTATCCAGAAGATTTTAGACAGCGGAGAACAGATAGAACTGAAACATTTCAAGCCAGTTAAACCTTTGGGATCTGGCGATACTGGCAGCGTGCATTTGGTAGAACTGTGTGGAACTGATCAATTTTTTGCAATGAAGGCAATGGATAAGGGTGTAATGCTCAACCGTAACAAGGTTTTGAATACATTTTCATTGGTTCATGTTAGAAATTCTATTACGTTTCACTTGGCTTTCGGGATAATTTACCGGGATCTGAAGCCCGAGAATGTTCTACTACAAGGTAATGGACACGTTGCCTTGACGGATTTTGACTTGTCATGTTTGACGTCTTGTAAACCTCAGCTTTTGCTTCCAACAACAAATGAGAAGAAAAAACAATCAAGAGCTCAACAGGCTCCCGTCTTTATGGCCGAACCTATGCGAGCATCGAACTCCTTTGTCGGAACCGAAGAGTACATAGCACCGGAAATTATTACTGGGGCTGGCCATACCAGTGCAGTGGACTGGTGGGCTTTGGGTATCCTTCTATATGAGATGCTCTATGGTTACACACCCTTTAGAGGGAAGACAAGGCAAAAGACTTTCGCTAACATTCTTCACAAGGATCTTAAGTTTCCAAGAAGTTACTGCATAGAGACGCCAAAAACCGATTGGGTTCTCGAGAAGGAGCAAATGAAATCAAACGACATCCTTTCTTCCGAGGCGTTAATTGGGCGCTCGTTCGATGCATGCATCCTCCCGAGCTCGAAGCGTCTCTTTTCCAGTCCGTCGAACCCGAAAAAGATGCTAATAATAAAGCTCCAGTTTTGGATGTAA | 4218 | 46.85 | MGCFRHSKKQRKKFEINSPISSVKVEADLKVETREEVKEQTRENDQLASNINREVSGKVKTNEEIEKFTFHELVEATRNFKSDCFLGEGGFGKVYKGHLIRIDQVVAIKQLDRNGLQGVREFVVEVLTLSLADHPNLVKLLGYCAERDERLLVYEFMPLGSLDKHLHDLPPGKNVLDWNTRMKIAVGAARGLEYLHNKMRPAVIYRDLKCSNILLGEGYWPKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPDYAMTGQLTFKCDIYSFGVVLLELITGRKVIDYTRPPKELSLVTWAKPLFRDRKRFLTMVDPRLDGQFPVRGLYQALAIAAMCVQEQPTQRPVISEVQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSFLPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVSCLLCPVICKSFFSPANAVNLVIKDGGIKAVYASEFPEAPKYIDHVELAILGDAGMQIASSPLNLTSVGARDLRTPGAFKKSRFLRSPHRRSSPLLPILLTLQSLPSTFNQLSPRDLMEPLDKPASNSSPLAPFPRDARGSLEVFNPSATYSSHSINSISRANPTCPSWAEPDSAKLAAKPSSKTGDEITSWMAFKDSNAPPQPSSPVVQKTISAILSDKPPSEKPQSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNIKQENSRRASNNSVRSSGDMSEEGGRERGFPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNWVQTQTLKMWPRSGRVYKLGRVTVGARQKEMATSSVTELVQAVKRPRSLSESRPRALSESMNRRLFRKSGGGGGGDNDGDRFETGMVRRKSESAAASTGRGSRRSMRRINEVPDKKPKKSSRRSFMGIMRKSQSNVDSIDVEDGSDDDNDTDDDDRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIPETTAKHGEKLIKETAENVDLAARELPDANLTPEDLWANHSKMVQPKPHRKDSPSWKAIQKILDSGEQIELKHFKPVKPLGSGDTGSVHLVELCGTDQFFAMKAMDKGVMLNRNKVLNTFSLVHVRNSITFHLAFGIIYRDLKPENVLLQGNGHVALTDFDLSCLTSCKPQLLLPTTNEKKKQSRAQQAPVFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSYCIETPKTDWVLEKEQMKSNDILSSEALIGRSFDACILPSSKRLFSSPSNPKKMLIIKLQFWM | 1405 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 2135318 | 2152071 | - | CmaCh20G004510.1 | Cma20g00451 | 316265 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g00451 | 1405 | MobiDBLite | consensus disorder prediction | 836 | 958 | - | - | |
Cma20g00451 | 1405 | MobiDBLite | consensus disorder prediction | 686 | 740 | - | - | |
Cma20g00451 | 1405 | PANTHER | PHOTOTROPIN-1 | 1212 | 1343 | - | - | |
Cma20g00451 | 1405 | Gene3D | Phosphorylase Kinase; domain 1 | 40 | 156 | - | - | |
Cma20g00451 | 1405 | PANTHER | PHOTOTROPIN-1 | 816 | 1193 | - | - | |
Cma20g00451 | 1405 | Coils | Coil | 30 | 50 | - | - | |
Cma20g00451 | 1405 | Pfam | Protein kinase domain | 85 | 351 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma20g00451 | 1405 | Pfam | Protein kinase domain | 1208 | 1340 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma20g00451 | 1405 | MobiDBLite | consensus disorder prediction | 553 | 575 | - | - | |
Cma20g00451 | 1405 | SUPERFAMILY | Protein kinase-like (PK-like) | 1149 | 1343 | IPR011009 | - | |
Cma20g00451 | 1405 | MobiDBLite | consensus disorder prediction | 931 | 948 | - | - | |
Cma20g00451 | 1405 | ProSitePatterns | Protein kinases ATP-binding region signature. | 86 | 109 | IPR017441 | GO:0005524 | |
Cma20g00451 | 1405 | MobiDBLite | consensus disorder prediction | 839 | 853 | - | - | |
Cma20g00451 | 1405 | Gene3D | Phosphorylase Kinase; domain 1 | 1140 | 1204 | - | - | |
Cma20g00451 | 1405 | ProSiteProfiles | Protein kinase domain profile. | 80 | 359 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma20g00451 | 1405 | PANTHER | FLIPPASE KINASE 1-RELATED | 1212 | 1343 | - | - | |
Cma20g00451 | 1405 | SMART | pac_2 | 1027 | 1069 | IPR001610 | - | |
Cma20g00451 | 1405 | SMART | serkin_6 | 80 | 356 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma20g00451 | 1405 | SMART | serkin_6 | 1151 | 1405 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma20g00451 | 1405 | PANTHER | PHOTOTROPIN-1 | 80 | 229 | - | - | |
Cma20g00451 | 1405 | Gene3D | PAS domain | 950 | 1103 | - | - | |
Cma20g00451 | 1405 | ProSiteProfiles | PAC domain profile. | 1024 | 1078 | IPR000700 | - | |
Cma20g00451 | 1405 | PANTHER | FLIPPASE KINASE 1-RELATED | 80 | 229 | - | - | |
Cma20g00451 | 1405 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1205 | 1391 | - | - | |
Cma20g00451 | 1405 | CDD | STKc_IRAK | 86 | 352 | - | - | |
Cma20g00451 | 1405 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 763 | 801 | IPR035965 | - | |
Cma20g00451 | 1405 | ProSiteProfiles | Protein kinase domain profile. | 996 | 1405 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma20g00451 | 1405 | MobiDBLite | consensus disorder prediction | 714 | 728 | - | - | |
Cma20g00451 | 1405 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1214 | 1226 | IPR008271 | GO:0004672|GO:0006468 | |
Cma20g00451 | 1405 | Gene3D | PAS domain | 738 | 861 | - | - | |
Cma20g00451 | 1405 | SUPERFAMILY | Protein kinase-like (PK-like) | 64 | 379 | IPR011009 | - | |
Cma20g00451 | 1405 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 978 | 1065 | IPR035965 | - | |
Cma20g00451 | 1405 | PANTHER | FLIPPASE KINASE 1-RELATED | 691 | 792 | - | - | |
Cma20g00451 | 1405 | MobiDBLite | consensus disorder prediction | 895 | 912 | - | - | |
Cma20g00451 | 1405 | PANTHER | FLIPPASE KINASE 1-RELATED | 816 | 1193 | - | - | |
Cma20g00451 | 1405 | Pfam | PAS domain | 763 | 796 | IPR000014 | - | |
Cma20g00451 | 1405 | Pfam | PAS domain | 985 | 1065 | IPR000014 | - | |
Cma20g00451 | 1405 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 203 | 215 | IPR008271 | GO:0004672|GO:0006468 | |
Cma20g00451 | 1405 | Gene3D | Transferase(Phosphotransferase) domain 1 | 157 | 370 | - | - | |
Cma20g00451 | 1405 | CDD | PAS | 977 | 1065 | IPR000014 | - | |
Cma20g00451 | 1405 | PANTHER | PHOTOTROPIN-1 | 691 | 792 | - | - | |
Cma20g00451 | 1405 | ProSiteProfiles | PAS repeat profile. | 742 | 793 | IPR000014 | - | |
Cma20g00451 | 1405 | ProSitePatterns | Protein kinases ATP-binding region signature. | 1157 | 1180 | IPR017441 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma20g00451 | Cma-Chr20:2135318 | Cma20g00692 | Cma-Chr20:3167759 | 9.03E-06 | dispersed | |
Cma13g00169 | Cma-Chr13:1291866 | Cma20g00451 | Cma-Chr20:2135318 | 6.06E-173 | wgd | |
Cma14g00183 | Cma-Chr14:761708 | Cma20g00451 | Cma-Chr20:2135318 | 3.65E-144 | wgd | |
Cma02g00853 | Cma-Chr2:4972923 | Cma20g00451 | Cma-Chr20:2135318 | 1.76E-10 | wgd | |
Cma20g00451 | Cma-Chr20:2135318 | Cma04g00257 | Cma-Chr4:1266414 | 3.13E-150 | wgd | |
Cma20g00451 | Cma-Chr20:2135318 | Cma04g01234 | Cma-Chr4:6306340 | 4.66E-148 | wgd | |
Cma20g00451 | Cma-Chr20:2135318 | Cma06g00343 | Cma-Chr6:1593759 | 3.50E-151 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69388 | PF00069 | Pkinase | 4.80E-40 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g00451 | K20715 | - | csin:114287068 | 660.218 |