Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00457 ATGTTTGATCTTAATCTCAATGTCGACTCGCCTGATGCAACGCCGAATGAGGACTCTGTCCTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAATCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGACGACTCGTGCTCCACACGCGCCGGTGGCGAGCTCTTCATGATCAACTTCGGGATATTGAAGTCTGGAAGCGCGAACGACGTTGTCACGAAGGAGCTTTTTCCAATAGGTGGAACGGTGAATCCTGACTTCGGGATTCTTCAGGGGCATAACTCTGCCTGTTCGTCAAATTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGGTCAGCAGGGGAGGGGAGAATGATGCAACCGGTTCAGCCTCAGCCGGCGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGTGGGAAGCAAGTCTATCTCGGTGGATTTGACACTGCACATTCAGCGGCGAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGACGCTGACATTAATTTCATCCTTAGTGATTACGAGGAAGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAAAGCACTGGTTTCTCAAGAGGGAGCTCAAAATACAGAGGGGTTACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTCGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGATAAGGCTGCCATCCAATGTAATGGGCGGGAGGCAGTGACCAACTTTGAGCCTAGCACGTACGGAGAAAGGGTTTCTGAGGGCAGTAGTGAAGGTTGTCGGATCATGCTTGATTTGAATTTAGGGATTTCGCCCCTCTCACTTGACAACTATCCAAAGGATAATGAGGGGCACCTGCGGTTCCAATCTGGTCCTTGCTATGCTAATGACAGGAGCACAATGATAGAGAGCAATGCTGATGCAGCAGTTGGCGATCCATCTTTGAAAGGGCCGGTAATGGCAACAGGGCATGTTCCCTTATGGAATGGTTTACAACATTCTTGCTTACTTCCCAGTGAGGAACGCGTGACAGACAAGAGACATGCATTAGGTTCATCCCAAGGAGTCGTCCCCAACTGGGCATGGCAAATTCATAACCAGGTTAATGCCACCCAACTCCCATTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTATCCCGGCTGCCATCCTTCCACCGCGCCAACCGGGCTCGACCGCCCATAACCTCCATTTCACTTCGGCCAAAGCTTCCCTCAACTCCCCTCAGTTGAACCCACAACAGCCACCACCATAA 1467 50.51 MFDLNLNVDSPDATPNEDSVLFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFMINFGILKSGSANDVVTKELFPIGGTVNPDFGILQGHNSACSSNSSRKNWINLAFDRSGSAGEGRMMQPVQPQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFILSDYEEDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIQCNGREAVTNFEPSTYGERVSEGSSEGCRIMLDLNLGISPLSLDNYPKDNEGHLRFQSGPCYANDRSTMIESNADAAVGDPSLKGPVMATGHVPLWNGLQHSCLLPSEERVTDKRHALGSSQGVVPNWAWQIHNQVNATQLPLFSAAASSGFSFSAIPAAILPPRQPGSTAHNLHFTSAKASLNSPQLNPQQPPP 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2186182 2189356 - CmaCh20G004570.1 Cma20g00457 316271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00457 488 Pfam AP2 domain 247 295 IPR001471 GO:0003700|GO:0006355
Cma20g00457 488 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Cma20g00457 488 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 452 - -
Cma20g00457 488 MobiDBLite consensus disorder prediction 27 58 - -
Cma20g00457 488 CDD AP2 247 307 IPR001471 GO:0003700|GO:0006355
Cma20g00457 488 SUPERFAMILY DNA-binding domain 247 306 IPR016177 GO:0003677
Cma20g00457 488 CDD AP2 156 211 IPR001471 GO:0003700|GO:0006355
Cma20g00457 488 SUPERFAMILY DNA-binding domain 155 212 IPR016177 GO:0003677
Cma20g00457 488 MobiDBLite consensus disorder prediction 128 157 - -
Cma20g00457 488 SMART rav1_2 156 218 IPR001471 GO:0003700|GO:0006355
Cma20g00457 488 SMART rav1_2 248 311 IPR001471 GO:0003700|GO:0006355
Cma20g00457 488 ProSiteProfiles AP2/ERF domain profile. 248 305 IPR001471 GO:0003700|GO:0006355
Cma20g00457 488 MobiDBLite consensus disorder prediction 30 58 - -
Cma20g00457 488 Gene3D AP2/ERF domain 155 213 IPR036955 GO:0003700|GO:0006355
Cma20g00457 488 Gene3D AP2/ERF domain 247 306 IPR036955 GO:0003700|GO:0006355
Cma20g00457 488 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 452 - -
Cma20g00457 488 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Cma20g00457 488 PRINTS Ethylene responsive element binding protein signature 287 307 IPR001471 GO:0003700|GO:0006355
Cma20g00457 488 ProSiteProfiles AP2/ERF domain profile. 156 212 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00966 Cma-Chr3:6855496 Cma20g00457 Cma-Chr20:2186182 2.05E-102 dispersed
Cma07g00694 Cma-Chr7:3053919 Cma20g00457 Cma-Chr20:2186182 3.05E-106 dispersed
Cma14g00185 Cma-Chr14:775692 Cma20g00457 Cma-Chr20:2186182 1.55E-113 wgd
Cma02g00857 Cma-Chr2:5007350 Cma20g00457 Cma-Chr20:2186182 0 wgd
Cma20g00457 Cma-Chr20:2186182 Cma04g00262 Cma-Chr4:1293232 2.19E-63 wgd
Cma20g00457 Cma-Chr20:2186182 Cma04g01236 Cma-Chr4:6333575 1.26E-63 wgd
Cma20g00457 Cma-Chr20:2186182 Cma06g00347 Cma-Chr6:1612143 1.39E-86 wgd
Cma20g00457 Cma-Chr20:2186182 Cma07g00939 Cma-Chr7:4516453 1.17E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36997 PF00847 AP2 5.00E-09 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00457 K09284 - csv:101222024 810.061