Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00461 ATGGACGACTTCTTAGACAATATACCGCCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTTCAGCTTATCATCCCCGTCGAGTCTGCTCATCGAGCCATTTCGTACCTTGGCGAGCTTGGCATCCTTCAATTTAGAGATTTAAACGCGGACAAAAGTCCTTTCCAGAGAACCTTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTCAAGGAAGTTACGATTTTTCAAAGATCAAATCAGTAAAGCTGGTGTACTGGCATCTACACGCCCAATTCTTCAAGAACATATTGAGCTAGAGAATTTAGAGATACGACTAGCTGATCATGAGCATGAGCTGATTGAAATGAACTCAAACAGCGAGAAACTTCAACAGTCATATAATGAACTATTAGAATTCAAGATGGTATTGCAGAAGGCAAGCGTCTTTCTGGTGTCTAGTAATAGCCATTCAGTTTCAGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAACTATACCGAGGATGGATCATTACTTGAACAGGAAATGAGACCTGGACCATCCAGCCAACCTGGTTTGAGATTTATTTGTGGAATTATTTGTAAATCCAAAGTTCTCAGATTTGAAAGGATGCTGTTTCGTGCAACAAGGGGAAATATGCTTTTCAACCAGGCACCAGCAGATGTACAGATCATGGATCCCATATCTATGGAAATGGTTGAGAAATCAGTATTTGTAGTGTTTTTCTCTGGGGAGCAGGCCAGAAATAAAGTTTTGAAGATCTGTGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAAAGGCAGATAACTAGAGAAGTTTCATCACGCCTCACTGAACTTGAAGCCACTTTAGATGCTGGGATCCGTCACCGAAATGAGGCTCTTGCATCAATAGGATTTCACTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGACACATTGAATATGTTGAATTTTGATGTCACTAAAAAATGTCTCGTTGGAGAAGGCTGGTGCCCAATCTTTGCAAAATCTCAGATTCAGGAATCTCTGCAACGAGCAACATTTGATAGCAGTTCACAAGTGGGGATAATATTTCATGTGATGGATACGGTTGAATCCCCTCCTACATATTTTAGAACAAACCGATTAACAAGTGCTTTTCAAGAAATTGTTGATGCCTATGGTGTCGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACATTTCCGTTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGTTTGTTGCTTGGAGCTTTATTTCTTATAGCTCGTGAAAGTAAGCTCAATAATCAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGACGCTATGTTCTTCTTTTGATGTCACTTTTTTCAATTTATTGTGGGTTGATCTACAATGAGTTCTTCTCTGTTCCGTATCATATATTCGGCGCGTCTGCCTACAAGTGTAGAGATACCACATGCAGTGATGTACACACTGTTGGGTTAGTTAAATACCGCGATGCCTATCCATTTGGTGTTGACCCAAGCTGGCGCGGAAGTCGTTCAGAACTTCCTTTTCTGAACTCTCTTAAAATGAAGTTATCTATCTTGTTGGGTATTGCCCAAATGAACTTAGGGATCATATTGAGTTACTTTAATGCACGCTTTACTGGAAGCTCACTTGATATCAGGTACCAGTTTGTACCACAAGTGATTTTTCTTAACAGCCTTTTCGGATATCTATCTCTTCTCATTGTCATCAAGTGGTGCACTGGATCTCAAGCAGACCTCTATCATGTGATGATTTACATGTTTTTAAGCCCATTTGATGATCTTGGTGAGAACGAATTGTTTTGGGGCCAAAGACCTCTTCAAATTATCTTGTTGATGTTGGCTATAGTTGCAGTGCCTTGGATGCTTTTCCCTAAACCCTTTATTTTGAAAAAGATTCACACAGAGAGATTTCAAGGTCGTACTTATGGGATGCTTGGAACCTCTGAGATGGATCTTGAAGTGGAACCTGATTCGGCAAGGCAACACCAAGAGGATTTCAATTTTAGTGAGATCTTTGTTCACCAAATGATTCACTCCATAGAATTTGTCTTGGGTGCAGTTTCAAATACAGCGTCGTATCTCCGACTTTGGGCTTTAAGCTTGGCGCACTCAGAACTGTCAACAGTTTTCTACGAGAAAGTACTCCTCCTAGCTTGGGGGTATGACAGCTTTGTCATTCGGCTGATTGGATTAGCTGTTTTTTCGTTTGCCACTGCTTTCATACTTCTCATGATGGAGACCCTTAGTGCCTTCCTCCATGCCTTACGTCTCCATTGGGTTGAGTTTCAAAATAAGTTCTACCATGGTGATGGCTACAAATTCAAACCTTTTTCCTTCGCCTCCATTGACGAGGACGAAGATTAA 2460 40.53 MDDFLDNIPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDLNADKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELENLEIRLADHEHELIEMNSNSEKLQQSYNELLEFKMVLQKASVFLVSSNSHSVSEERELNENVFLNDNYTEDGSLLEQEMRPGPSSQPGLRFICGIICKSKVLRFERMLFRATRGNMLFNQAPADVQIMDPISMEMVEKSVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKSQIQESLQRATFDSSSQVGIIFHVMDTVESPPTYFRTNRLTSAFQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALFLIARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCRDTTCSDVHTVGLVKYRDAYPFGVDPSWRGSRSELPFLNSLKMKLSILLGIAQMNLGIILSYFNARFTGSSLDIRYQFVPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFDDLGENELFWGQRPLQIILLMLAIVAVPWMLFPKPFILKKIHTERFQGRTYGMLGTSEMDLEVEPDSARQHQEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFASIDEDED 819
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
20 2208366 2218138 - CmaCh20G004610.1 Cma20g00461 316275
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00461 819 PANTHER VACUOLAR PROTON ATPASE A1 5 819 - -
Cma20g00461 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220|GO:0046961
Cma20g00461 819 PANTHER VACUOLAR PROTON ATPASES 5 819 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cma20g00461 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cma20g00461 819 Coils Coil 93 127 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma02g00864 Cma20g00461 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00279 Cma-Chr5:1187764 Cma20g00461 Cma-Chr20:2208366 2.72E-08 dispersed
Cma11g01088 Cma-Chr11:5976677 Cma20g00461 Cma-Chr20:2208366 0 dispersed
Cma12g00431 Cma-Chr12:2249053 Cma20g00461 Cma-Chr20:2208366 0 dispersed
Cma19g00683 Cma-Chr19:7079317 Cma20g00461 Cma-Chr20:2208366 8.83E-51 dispersed
Cma02g00864 Cma-Chr2:5039469 Cma20g00461 Cma-Chr20:2208366 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00461 K02154 - csv:101216514 1591.63