Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00467 ATGGAAGGCAGTGATTCAATCATCACCCTTTCATCAACTCCACCATCTCAATCTCCTTCCTCTTCTTCTTCTCCGGCACCGCCACCGCCTGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGGCGGCGATGTGCTGAGGGATGTGTATTGGCGCCCTATTTTCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGTGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCAGAATCTCAAAGAGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCGAGTGCGAGGATCAGAGATCCTGTTTACGGATCAGCAGGTGCCATTTGCCAACTCCAAAAGCAAGTCAATGAGCTTCAAGCACAGCTAGCCAAGGCCCAAGCAGAGGTCGTCAACATGCAATGCCAACAAGCCAATCTCGTGGCCTTCGTTTGCAGGGAATTAGCTCAATCTCATCAGTCTTCTTTTGATGATTTGAATGCCGACTCTCACAGTGGCTTATTCCACAGCATCAGCAGCCCAAGCTACTTTGATGATACCAATGTAAACCCACTGTGGGAACCTCTCTGGACATGA 591 50.08 MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPSYFDDTNVNPLWEPLWT 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2255365 2257151 + CmaCh20G004670.1 Cma20g00467 316281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00467 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 193 - -
Cma20g00467 196 MobiDBLite consensus disorder prediction 1 19 - -
Cma20g00467 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 11 193 - -
Cma20g00467 196 Coils Coil 114 141 - -
Cma20g00467 196 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Cma20g00467 196 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Cma20g00467 196 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00467 Cma-Chr20:2255365 Cma02g00024 Cma-Chr2:124732 3.43E-51 dispersed
Cma01g00534 Cma-Chr1:2764711 Cma20g00467 Cma-Chr20:2255365 7.54E-76 wgd
Cma13g00195 Cma-Chr13:1537977 Cma20g00467 Cma-Chr20:2255365 1.89E-71 wgd
Cma15g00433 Cma-Chr15:1939997 Cma20g00467 Cma-Chr20:2255365 8.03E-62 wgd
Cma02g00871 Cma-Chr2:5081153 Cma20g00467 Cma-Chr20:2255365 8.48E-95 wgd
Cma20g00467 Cma-Chr20:2255365 Cma04g00272 Cma-Chr4:1334411 6.14E-81 wgd
Cma20g00467 Cma-Chr20:2255365 Cma04g01242 Cma-Chr4:6371441 2.09E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36999 PF03195 LOB 2.50E-41 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00467 - - csv:101215067 294.664