Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00474 ATGGGAAAAGAGAAGACTCACATCAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAGTCTACAACCACCGGACACTTGATCTACAAGCTTGGTGGTATCGACAAGCGTGTTATTGAAAGGTTCGAGAAGGAGGCTGCTGAGATGAACAAGAGGTCATTCAAATATGCCTGGGTGTTGGACAAACTCAAGGCTGAGCGTGAACGTGGTATTACCATCGATATTGCTTTGTGGAAGTTCGAGACCACAAAATACTACTGCACCGTTATCGATGCCCCTGGACATCGTGATTTCATTAAGAACATGATTACTGGTACCTCACAGGCCGATTGCGCTGTTCTCATTATTGATTCCACTACTGGTGGTTTTGAAGCCGGTATTTCAAAGGATGGGCAAACCCGTGAGCATGCTTTGCTTGCGTTTACTCTTGGTGTCAAGCAGATGATCTGCTGCTGCAACAAGATGGATGCCACCACCCCCAAGTACTCCAAGGCAAGGTATGACGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGATACAACCCTGACAAAATCCCATTCGTCCCCATCTCTGGTTTCGAAGGAGACAACATGATTGAGAGGTCAACGAACCTCGACTGGTACAAGGGTCCAACCCTCCTCGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCCTCGGACAAGCCACTCCGTCTTCCACTCCAGGATGTGTACAAGATTGGTGGTATTGGCACTGTACCTGTTGGACGTGTTGAGACTGGGGTACTCAAGCCTGGTATGGTCGTCACTTTTGGCCCATCTGGATTGACCACTGAAGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCCCAGAGGCTCTTCCTGGTGACAATGTCGGATTCAATGTGAAGAATGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTTGCTTCCAATTCAAAGGATGATCCTGCCAGGGAGGCTGCCAACTTCACATCTCAGGTCATTATCATGAACCACCCAGGGCAGATTGGCAATGGCTATGCTCCAGTGCTTGATTGCCACACCTCTCACATTGCCGTGAAGTTTGCTGAGATTCTGACCAAGATCGACAGGCGATCTGGTAAAGAACTCGAGAAGGAGCCGAAGTTCTTGAAAAATGGTGATGCGGGTATGATTAAGATGGTTCCCACCAAGCCCATGGTGGTGGAAACCTTCTCCCAGTACCCACCTCTTGGACGTTTTGCTGTGAGGGACATGAGACAGACCGTGGCTGTCGGAGTCATCAAGTCGGTCGAGAAAAAGGATCCAAGTGGTGCCAAGGTTACCAAGTCCGCAGTGAAGAAGGGTGGAAAGTGA 1350 49.19 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMIKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAVKKGGK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2285299 2287946 + CmaCh20G004740.1 Cma20g00474 316288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00474 449 PANTHER TRANSLATION FACTOR 1 447 - -
Cma20g00474 449 Gene3D Translation factors 323 430 - -
Cma20g00474 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cma20g00474 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Cma20g00474 449 CDD EF1_alpha_II 230 320 - -
Cma20g00474 449 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 447 - -
Cma20g00474 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Cma20g00474 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Cma20g00474 449 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Cma20g00474 449 Gene3D Translation factors 229 316 - -
Cma20g00474 449 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Cma20g00474 449 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cma20g00474 449 CDD EF1_alpha_III 323 426 - -
Cma20g00474 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Cma20g00474 449 CDD EF1_alpha 9 227 - -
Cma20g00474 449 Pfam Elongation factor Tu GTP binding domain 5 221 IPR000795 GO:0003924|GO:0005525
Cma20g00474 449 Gene3D - 1 226 IPR027417 -
Cma20g00474 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Cma20g00474 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Cma20g00474 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Cma20g00474 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Cma20g00474 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Cma20g00474 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00438 Cma-Chr15:1963710 Cma20g00474 Cma-Chr20:2285299 0 dispersed
Cma18g00058 Cma-Chr18:245718 Cma20g00474 Cma-Chr20:2285299 1.57E-92 dispersed
Cma08g01019 Cma-Chr8:6382979 Cma20g00474 Cma-Chr20:2285299 0 transposed
Cma17g00102 Cma-Chr17:495733 Cma20g00474 Cma-Chr20:2285299 0 transposed
Cma09g00521 Cma-Chr9:2314019 Cma20g00474 Cma-Chr20:2285299 7.58E-96 transposed
Cma15g00437 Cma-Chr15:1959053 Cma20g00474 Cma-Chr20:2285299 0 wgd
Cma02g00878 Cma-Chr2:5106889 Cma20g00474 Cma-Chr20:2285299 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00474 K03231 - csv:101213221 900.197