Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00475 ATGGAAATTGATCTGAACCAAACAGCCAGTGAGGTGGGGAAGAATGCATATTGCCATGGAAATTGTGAAGAGGGTCGCTGCAATTGCTGTTTATCATCTTCAACTTCTTCTTGTTCCTCAAATTCTTCATCAACTCCCGCCTCTTCTTCAACCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCCAAGAAAGGAAATGCAGTTGTCTATTTCCCACAAGGTCACTTGGAGCAAATTGCCTCTGCCTCTCCCTTTTCCCCCATGGACATGGCCACTTTTGACCTCCAGCCCCAGATCCTCTGCAAGGTCATCAATGTCCACCTACTTGCTAATAAGGAGAATGATGAGGTCTACACACAACTTACTCTGCTTCCTTTGCCAGAGTTATTAGGCACTGGCGTAGAGGGCAAAGAGCTGGAGGAATTGGCGTTGAATAGAGATGCTGATGGAGATGGTAGCGGAGGGTCGCCTACTAGATCCACACCTCACATGTTCTGTAAAACACTCACAGCGTCCGACACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTATACTCAGCTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTGGAGTGGAGATTTAAGCATATTTACAGAGGTCAACCTAGGCGGCATCTGCTCACTACTGGATGGAGTATTTTTGTAAGCCAAAAGAATCTTATTTCTGGGGATGCAGTGCTCTTTTTAAGGGGCGAAAATGGAGAGTTAAGGTTGGGAATAAGACGAGCTGTTCGGCCTAGAAATGGTCTTCCTGATTCAATTGTGGGCAACCAAAATTCTTGTGCAAATGATCTTACTCGTGTGGTGAAAGCAGTTTCCACCAAGAGCACGTTTGATGTGTTTTACAATCCAAGGGCACATCATGCACAATTTGTTGTATCTTGTCAGAAGTATGTGAAGAGCATCAACAATCCAGTGAACGTAGGCACAAGATTCAAAATGAGATTTGAGATGGACGATTCGCCAGAGAGAAGGTTTAATGGTGTAGTTGTCGGTATTGGCGACATGGATCCCTTTCGATGGCTGAACTCGAAATGGAGATGCTTAACGGTTCGATGGGATAAAGACAGTGATCATCAAGAACGCGTTTCACCCTGGGAGATTGATCCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCAGGCAGCCCCACCTAATAACGCCTTTAATGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAGTTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTATGGTATCACCCTTTTATGGTTGCGATACCGCAAAACGCTCACTGGAGTTTGAGGTGCGATCTTCTGCACAACAAAATCAAGCGTCAGGTGGAGTTGAAAAGCTTAATATAGGTGATTATGTTACTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACAAACAAGAAAACCAGAGCCTAGTTTAGGTGTTTGGGGAAAGTTCAATCTCAGTGACAACTCTTTTAACCCATTTCAATCACCAAACTCGAGTTTTTATCACATGGCGTCAAATGGCGCCCGAAACATGTATTACCCTCGTCGTGATATTTACAGTACTGGCCAAGCTGCCATGATGAGCTCAAATGATATCAATTTTCCAAGAGAGAGTGCCTTGTTGAACCCATCAGCAAAAATGGAAAGGGCTAATTCTACTCCTCCAACTTTAGGGTCGAATATGAGGAATTCAAAGGACGAAAATGTGAACCAGAACCGAACTGGCTGCAGCCTAGTGGGAAGAGCTATTGATCTCTCTAGACTGAATGGCTATACTGATCTTCTTTCTGAACTCGAACGCCTGTTTAGCATGGAAGGACTCTTAAAAGATCCCGATAAAGGATGGCGTGTATTGTACACCGACAACGAGAACGACGTAATGGTGGTCGGGGATTATCCATGGCATGATTTCTGTGATGCTGTTTCGAAAATCCACATATACACAGAAGAAGAAGTGGAAAAGATGACAAATGGAGTGATCAGTGATGATACTCAAAGCTGCTTAGATCAAGCTGCTTTGTGTATGGAAGCATCAAAATCGTCTTCAGTGGGCCAACCTGATTCATCTCCGACAGTACCCGTTGATTCTAATCAGGCGAACCACGGTCTTCTCTGCCCCGAAGCTCCCATTCAAAGAACTCAATATCCCTATGTGACTGGTACATCCGTGGTTGCCATCAAATACAAAGATGGGATTTTAATGGTTTCTGATTTGGGAGGCTCCTATGGTTCCACACTGCGGTATAAGAGTGTGGAGCGAATCAAAGCTATTGGAAAACATTCTCTACTTGGAGCAAGCGGAGAAATTAGTGACTTTCAGGAGTTATTGAGAAATCTTGATGAGCTTATTTGCTTGTTTTGTGCATCGATTTTGATTTACAACTTGAGTGAAATCTCTGATCGTATCGAACGGTGCAGCTTGTATGATAACATGTGGGATGATGGTAATGCTTTGGGGCCAAAGGAGATCCATAGCTACTTAACTCGAGTGATGTATAACAGGCGGAACAAGTTCAACCCACTTTGGAACTCGCTTGTTCTCGGTGGGGTGAAGAACGGGCAAAAGTATCTTGGCACGGTTAATATGATAGGTGTAACTTTTGAAGATGATCATGTTACTACTGGCTTTGGCAATCACCTTGCACGACCAATTCTTCGTGATGAGTGGCACGAGAACCTGACTTTTGTAGAAGGTGTGAAATTGCTGGAGAAATGCATGAGGGTTCTCTTATACCGTGATAGATCGGCTGTCAACAAGCTCCAGGAGAAGGTACATGAACTTGGGGAGCCATTCTTCGCATTGTATATTCAAATCTTCGGCTTGCTCCGTAGAAGATATGATGCCGACACTGGAACTCGGATTAGGAACAAGCGTCGGTACCATCTCTCCTGCGAAGTAAGCCTTCCATTGCTTTTGTTGCAGACCAATCTTTGTGTTGCTTCTAAATTGTATAGAGAAAAGCTTCCATCTTCCCATCCAGATTGA 3147 44.61 MEIDLNQTASEVGKNAYCHGNCEEGRCNCCLSSSTSSCSSNSSSTPASSSTYLELWHACAGPLTSLPKKGNAVVYFPQGHLEQIASASPFSPMDMATFDLQPQILCKVINVHLLANKENDEVYTQLTLLPLPELLGTGVEGKELEELALNRDADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPDSIVGNQNSCANDLTRVVKAVSTKSTFDVFYNPRAHHAQFVVSCQKYVKSINNPVNVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWLNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQAAPPNNAFNGRGGFMDFEDSVRSSKVLQGQENVGMVSPFYGCDTAKRSLEFEVRSSAQQNQASGGVEKLNIGDYVTSFTGFMESDRFLKVLQGQEICSLRPQTRKPEPSLGVWGKFNLSDNSFNPFQSPNSSFYHMASNGARNMYYPRRDIYSTGQAAMMSSNDINFPRESALLNPSAKMERANSTPPTLGSNMRNSKDENVNQNRTGCSLVGRAIDLSRLNGYTDLLSELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWHDFCDAVSKIHIYTEEEVEKMTNGVISDDTQSCLDQAALCMEASKSSSVGQPDSSPTVPVDSNQANHGLLCPEAPIQRTQYPYVTGTSVVAIKYKDGILMVSDLGGSYGSTLRYKSVERIKAIGKHSLLGASGEISDFQELLRNLDELICLFCASILIYNLSEISDRIERCSLYDNMWDDGNALGPKEIHSYLTRVMYNRRNKFNPLWNSLVLGGVKNGQKYLGTVNMIGVTFEDDHVTTGFGNHLARPILRDEWHENLTFVEGVKLLEKCMRVLLYRDRSAVNKLQEKVHELGEPFFALYIQIFGLLRRRYDADTGTRIRNKRRYHLSCEVSLPLLLLQTNLCVASKLYREKLPSSHPD 1048
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2288731 2298136 - CmaCh20G004750.1 Cma20g00475 316289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00475 1048 Pfam B3 DNA binding domain 170 271 IPR003340 GO:0003677
Cma20g00475 1048 SUPERFAMILY DNA-binding pseudobarrel domain 164 280 IPR015300 -
Cma20g00475 1048 CDD proteasome_beta_type_4 773 975 IPR016295 -
Cma20g00475 1048 ProSiteProfiles B3 DNA-binding domain profile. 170 272 IPR003340 GO:0003677
Cma20g00475 1048 ProSiteProfiles Proteasome beta-type subunit profile. 774 979 IPR023333 -
Cma20g00475 1048 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 610 737 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma20g00475 1048 PANTHER AUXIN RESPONSE FACTOR 21 593 - -
Cma20g00475 1048 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 768 972 IPR029055 -
Cma20g00475 1048 Gene3D - 168 272 IPR015300 -
Cma20g00475 1048 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 771 981 IPR029055 -
Cma20g00475 1048 Pfam Proteasome subunit 881 973 IPR001353 GO:0005839|GO:0051603
Cma20g00475 1048 Pfam Proteasome subunit 773 833 IPR001353 GO:0005839|GO:0051603
Cma20g00475 1048 SMART B3_2 170 272 IPR003340 GO:0003677
Cma20g00475 1048 Pfam Auxin response factor 297 377 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma20g00475 1048 MobiDBLite consensus disorder prediction 599 626 - -
Cma20g00475 1048 ProSiteProfiles PB1 domain profile. 625 703 IPR000270 GO:0005515
Cma20g00475 1048 PANTHER AUXIN RESPONSE FACTOR 610 737 - -
Cma20g00475 1048 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 593 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma20g00475 1048 Pfam AUX/IAA family 669 706 IPR033389 -
Cma20g00475 1048 SUPERFAMILY CAD & PB1 domains 635 699 - -
Cma20g00475 1048 CDD B3_DNA 168 270 IPR003340 GO:0003677
Cma20g00475 1048 Gene3D - 619 710 - -
Cma20g00475 1048 Gene3D - 334 403 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00881 Cma20g00475 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01298 Cma-Chr3:8415430 Cma20g00475 Cma-Chr20:2288731 5.34E-138 dispersed
Cma07g00214 Cma-Chr7:992555 Cma20g00475 Cma-Chr20:2288731 2.44E-147 dispersed
Cma20g00475 Cma-Chr20:2288731 Cma10g00017 Cma-Chr10:64046 3.21E-22 dispersed
Cma02g00881 Cma-Chr2:5229657 Cma20g00475 Cma-Chr20:2288731 0 transposed
Cma02g00879 Cma-Chr2:5109675 Cma20g00475 Cma-Chr20:2288731 3.56E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37000 PF00227 Proteasome 2.20E-11 CL0052 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00475 - - cmo:103501935 1321.61