Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00477 ATGGCCGGAGGTGGCGCCGGAAGGTCCTTGGAAGAGACGCCGACGTGGGCCGTCGCTGTCGTTTGTTTCGTTCTGGTTCTGATTTCCATAATCATCGAACACATTCTCCATCTCATCGGAAAGTGGCTTAAGAAGAAGCACAAACGAGCTCTTTACGAAGCTCTGGAGAAGATCAAATCGGAGCTGATGCTGTTGGGGTTCATTTCTCTGCTCCTAACGGTCGGACAGAGCTTAATCACCAATGTTTGTATACCCCCAGAAGTCGCCGCCACGTGGCATCCATGCAGCCCTAAAAAAGAGCTGGAGTTAACCCAAGCTCATGACTCAATCGACTCCGACAATAGTCGCCGGAAACTTCTCGCCATGTCCCCTGTTAATGCTTCTTTCCGGCGTGTCCTCGCCGCGGCCGGTGGATCCGACAAATGTGCTGAGAGGGGGAAAGTTCCGTTCGTGTCGGAAGGAGGAATCCATCAGCTGCATATATTCATCTTCGTATTGGCTGTTTTCCATGTTCTGTATTGTGTCTTAACTTTAGCTCTGGGTAATGCCAAGATGAGGAGCTGGAAGTCGTGGGAAAATGAAACGAGAACGGTCGAGTACCAATTTTCACATGATCCAGAACGGTTTCGATTTGCAAGAGACACGTCGTTCGGCCGAAGACATTTAAGTTTCTGGACGAAATCGCCCTTCCTCATGTGGATTGTTTGTTTCTTCCGACAATTTGTTCGATCCGTTCCTAAGGTTGATTACTTGACTTTAAGACATGGTTTCGTCATGGCACACCTGGCACCGCACAGCGATCAGAAATTTGACTTTAGGAAGTATATTAAGCGATCGCTAGAAGAAGATTTCAAGGTGGTTGTCAGTATCAGCCCGCCCATCTGGTTCTTCGCTGTCCTCTTCCTACTTTTCAACACCCACGGGTGGAGGGCTTATCTTTGGCTGCCATTTGTGCCATTAATTATTGTGTTATTGGTGGGGACTAAGTTGCAAGTCATAATTACGAAAATGGGCCTGAGGATTCAGGAACGAGGGGAGGTGGTGAAGGGAGTCCCGGTGGTCGAACCGGGGGACGACCTGTTTTGGTTCAACCGGCCCCGGCTCATTCTTTATCTCATCAATTTTGTGCTATTTCAGAATGCCTTTCAGCTTGCTTTCTTTGCTTGGACTTGGAAAGAATTTGGAATGAAATCTTGTTTTCACGAGCATATCGAGGATTTGGTGATCAGAATAACGATGGGAGTTCTCGTTCAAATCCTTTGCAGTTACGTTACGTTGCCTCTCTATGCCCTAGTCACACAGATGGGTTCGACGATGAAGCCAACGATTTTCAACGATAGAGTAGCGACAGCGTTGAGAAATTGGCACCACACAGCTCGTAAACACATCAAGCAAAATCGAGGGTCGATGACGCCGATGTCGAGTCGCCCTGCTACGCCCTCCCACCACATGTCACCAGTGCACCTTCTCCGCCACTATCGAAGCGAATTGGACAGTTTCCATACCTCTCCTAGAAGATCAAATTTCGACAACGACCAATGGGATCCAGACTCTCCTTCGCCGTCGCACCATTTCCACCGCCATCCTCTTGATGTCGAAGGCTCCAGTTCCCACAAACACTACCTCCACCGTAAAATGGAGGTCAACGATGTCGATGTTGACAGGGATTCACCCCAAATCGACTCAGTGACTCATACTCCAAATTCGAATGCGAATAATAACTTTGAGCAACACGAGATTGACGTGGGCCCAAAGGAATTCTCGTTCGATAGAAGAGTCGAGGGCTAA 1788 48.55 MAGGGAGRSLEETPTWAVAVVCFVLVLISIIIEHILHLIGKWLKKKHKRALYEALEKIKSELMLLGFISLLLTVGQSLITNVCIPPEVAATWHPCSPKKELELTQAHDSIDSDNSRRKLLAMSPVNASFRRVLAAAGGSDKCAERGKVPFVSEGGIHQLHIFIFVLAVFHVLYCVLTLALGNAKMRSWKSWENETRTVEYQFSHDPERFRFARDTSFGRRHLSFWTKSPFLMWIVCFFRQFVRSVPKVDYLTLRHGFVMAHLAPHSDQKFDFRKYIKRSLEEDFKVVVSISPPIWFFAVLFLLFNTHGWRAYLWLPFVPLIIVLLVGTKLQVIITKMGLRIQERGEVVKGVPVVEPGDDLFWFNRPRLILYLINFVLFQNAFQLAFFAWTWKEFGMKSCFHEHIEDLVIRITMGVLVQILCSYVTLPLYALVTQMGSTMKPTIFNDRVATALRNWHHTARKHIKQNRGSMTPMSSRPATPSHHMSPVHLLRHYRSELDSFHTSPRRSNFDNDQWDPDSPSPSHHFHRHPLDVEGSSSHKHYLHRKMEVNDVDVDRDSPQIDSVTHTPNSNANNNFEQHEIDVGPKEFSFDRRVEG 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2307515 2310786 + CmaCh20G004770.1 Cma20g00477 316291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00477 595 PANTHER MLO-LIKE PROTEIN 1 1 538 IPR004326 GO:0006952|GO:0016021
Cma20g00477 595 MobiDBLite consensus disorder prediction 500 559 - -
Cma20g00477 595 Pfam Mlo family 8 493 IPR004326 GO:0006952|GO:0016021
Cma20g00477 595 MobiDBLite consensus disorder prediction 579 595 - -
Cma20g00477 595 MobiDBLite consensus disorder prediction 500 595 - -
Cma20g00477 595 PANTHER MLO-LIKE PROTEIN 1 538 - -
Cma20g00477 595 MobiDBLite consensus disorder prediction 560 577 - -
Cma20g00477 595 MobiDBLite consensus disorder prediction 460 484 - -
Cma20g00477 595 MobiDBLite consensus disorder prediction 465 481 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00538 Cma20g00477 CCT
Cma01g00538 Cma20g00477 ECH
Cma02g00883 Cma20g00477 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00619 Cma-Chr3:5399530 Cma20g00477 Cma-Chr20:2307515 2.41E-178 dispersed
Cma03g01297 Cma-Chr3:8411062 Cma20g00477 Cma-Chr20:2307515 1.97E-149 dispersed
Cma04g01359 Cma-Chr4:6946409 Cma20g00477 Cma-Chr20:2307515 0 dispersed
Cma07g00379 Cma-Chr7:1625474 Cma20g00477 Cma-Chr20:2307515 5.41E-177 dispersed
Cma18g00888 Cma-Chr18:7659471 Cma20g00477 Cma-Chr20:2307515 0 dispersed
Cma01g00538 Cma-Chr1:2790988 Cma20g00477 Cma-Chr20:2307515 9.19E-158 wgd
Cma13g00188 Cma-Chr13:1437806 Cma20g00477 Cma-Chr20:2307515 0 wgd
Cma02g00883 Cma-Chr2:5245432 Cma20g00477 Cma-Chr20:2307515 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00477 K08472 - csv:101212018 1016.91