Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00484 ATGGCGAAGGACGTTGAAGCAGCCGAGCAAGGCGAATTCCACGGCAAGGACTACCAAGACCCACCCCCCGCCCCTCTAATCGACCCCGACGAGCTCACCAAATGGTCCCTTTACCGAGCCGCCATCGCCGAGTTCATCGCTACTCTTCTCTTCCTTTACGTCACCGTTTTGACCGTCATCGGCTACTCCCACCAAAGCGACCCTAACGTCTCCAAAGACCCATGTAACGGCGTCGGAATCCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGTATCTCCGGTGGCCACATTAACCCAGCTGTCACTTTCGGCCTCTTCTTGGCTCGTAAGGTGTCCCTCGTTCGGGCTTTGTTGTACATCATTGCTCAATGTGCCGGCGCTATCTGCGGCTGTGGCTTGGTCAAAGCCTTCCAGTCGGCCTACTATGTTAGGTATAACGGCGGCGCTAATATGCTCGCCGACGGTTACAACAAAGGCACTGGTTTGGGAGCTGAAATCATCGGTACATTTGTTCTTGTTTACACTGTCTTCTCCGCCACTGATCCCAAGAGAAACGCTAGAGATTCCCATGTTCCTGTCTTGGCGCCACTCCCAATTGGATTTGCAGTGTTCATGGTTCACTTGGCTACAATCCCCATCACTGGAACTGGTATTAACCCAGCAAGAAGCTTCGGAGCTGCTGTCATATTCAACACAGAGAAGGCCTGGGATGATCAATGGATTTTCTGGGTTGGGCCATTCATCGGAGCTGCCATTGCTGCCATTTACCACCAGTATGTTCTCAGAGCTGGCGCCATTAAAGCTCTTGGATCCTTCAGAAGCAACGCTTGA 858 53.38 MAKDVEAAEQGEFHGKDYQDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHQSDPNVSKDPCNGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCAGAICGCGLVKAFQSAYYVRYNGGANMLADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNTEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2339049 2340590 - CmaCh20G004840.1 Cma20g00484 316298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00484 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00484 285 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Cma20g00484 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00484 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00484 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00484 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00484 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00484 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00484 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00484 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Cma20g00484 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cma20g00484 285 PANTHER AQUAPORIN PIP2-4-RELATED 1 285 - -
Cma20g00484 285 TIGRFAM MIP: MIP family channel proteins 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00484 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00891 Cma20g00484 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00928 Cma-Chr7:4452094 Cma20g00484 Cma-Chr20:2339049 3.49E-168 dispersed
Cma15g01235 Cma-Chr15:7826897 Cma20g00484 Cma-Chr20:2339049 4.30E-142 dispersed
Cma15g00457 Cma-Chr15:2035913 Cma20g00484 Cma-Chr20:2339049 4.63E-09 wgd
Cma02g00891 Cma-Chr2:5289215 Cma20g00484 Cma-Chr20:2339049 0 wgd
Cma20g00484 Cma-Chr20:2339049 Cma03g01239 Cma-Chr3:8200297 9.90E-160 wgd
Cma20g00484 Cma-Chr20:2339049 Cma04g02577 Cma-Chr4:17684866 4.77E-165 wgd
Cma20g00484 Cma-Chr20:2339049 Cma06g00375 Cma-Chr6:1736779 2.02E-144 wgd
Cma20g00484 Cma-Chr20:2339049 Cma07g00926 Cma-Chr7:4445014 7.96E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00484 K09872 - csv:101215300 537.724