Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00486 ATGGCCATGGCTATAGCTCAGCACAGGGAGAGTAGTAGTGGGAGCATAACCAGGCATCTCGACAGTACTGGGAAGTACGTTCGATACACATCAGAGCAGGTGGAAGCTCTTGAGCGAGTCTATGCTGAGTGCCCGAAACCAAGTTCTCTTCGACGGCAGCAGCTCGTCCGGGAGTGCCCAATTCTTTCCAACATAGAGCCTAAGCAGATCAAAGTTTGGTTTCAGAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGGAAATTAAATGCTATGAACAAGTTGTTGATGGAGGAGAATGATCGGCTTCAGAAACAAGTTTCACAATTGGTGTGTGAAAATGGGTTTATGCGGCAGCAATTGCAAACAGTGCCAGCTGCAGCAACTACCGATGCAAGCTGCGATTCTGTGGTCACCACTCCTCAGCCCTCTCGACGAGATGCTAATAACGCAGCTGGACTCCTTTCCATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTTCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGTGGTGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGTCTTCGAAGATTGCCGAGATCCTTAAAGATCGTCCTTCGTGGTTTCGTGATTGTCGGAGCCTCGAGGTTTTTACCATGTTTCCAGCTGGAAACGGTGGGACAATTGAACTTGTTTACACACAGGTGTATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACGCTAAGATACACAACAACTTTAGAAAATGGCAGCCTTGTGGTTTGCGAGAGATCACTCTCTGGTTCTGGTGCTGGTCCTAGTGCAGCTGCTGCTGCTCAATTTGTGAGAGCTGAGATGCTCCCAAGTGGTTACCTGATTCGACCATGTGAGGGTGGTGGATCCATCATACATATTGTTGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGTTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACTATAGCAGCATTGCGGTACATTAGGCAAATAGCTCAGGAGACAAGTGGTGAAGTGGTTTATGGTCTGGGCCGGCAACCTGCTGTTCTGCGAACTTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGATTTAATGACAACGGATGGTCATTGATTAATTGTGAAGGTGCTGAGGATGTGGTACTTGCTGTGAATTCTACGAAAAATTTTGGCACAACATCGAACCCTGCTAACTCCTTGACTTATCCTGGGGGTGTTCTTTGTGCAAAGGCATCCATGCTACTCCAAAATGTTTCTCCTGCTGTGTTAGTTCGTTTCTTGAGGGAACATCGCTCAGAGTGGGCTGATTTCAACATTGATGCGTACTCTGCGGCAACCCTTAAAGCCAATTCATACGCATATCCTGGGATGAGACCCACGAGGTTTACTGGTAGCCAAATCATCATGCCACTTGGTCACACAATCGAGAATGAAGAGTTGCTTGAAGTAATTCGACTTGAGGGACATCCTATGGTACAAGAAGATGCTTTTGTTTCGAGGGACATTCATCTTCTTCAGATCTGTAGTGGAATTGACGAGAATGCTGTAGGAGCCTGTTCAGAACTCATTTTTGCACCTATTGATGAGATGTTTCCAGACGACGCCCCGTTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCCAGATCAAGTGACGCAAAGGGTAGTCAACGGACTCTGGATCTAACATCAAGTCTTGAGGTGGGCTGTGGAACTAGCAATGCTGCTGGAGATGCATCATCAAGTCCGAGCTCTAGATCAGTGTTAACTATTGCATTCCAGTTTCCTTTCGAAAGCAGCATGCAGGACAATGTTACAAACATGGCACACCAGTATGTACGAAGCGTCATTTCCTCAGTGCAACGAGTTGCAATGGCCATATCTCCTTCTGGGGGCAGTCCAGCACTGGGTCCAAAGCTGTCTCCTGGTTCCCCAGAAGCTCTTACTCTAGCACACTGGATATGCAAGAGCTATAGTTTCCAACTGGGATCGGAGTTGATCAGGTCGGATTCCTTGGAAAGTGATTCCGTGTTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGCTTAAGCAGGCACTGCCTGTTTTCCTGTTTGCAAACCAATCTGGTCTTGACATGTTGGAGACAACTCTAGTAGCCTTACAAGACATCACATTGGATAAGATCTTTGACGAGTCTGGTCGCAAAGCTCTGTGTTCTGATTTCCCAAAGTTAATGCAGCAGGGATTTGCATACTTGCCTGGTGGAATATGTGCATCGACCATGGGGCGACACGTTTCATACGAACAAGCCATTGCGTGGAAAGTCCTTGAGGCAGACGAGACGACGCAAGCCTTCTTCAATGGCTCCTCGACCTCGTCCATTGGAACAAGTGAAACGAAGATGAAGATGAAGATGTTTGTTTCAACGTCTGGCCTCCAAAGGCTTCAATTCGCCAAGCTTAAGTCTCAAGTCCCCCATGAAGAATTATATTTCAAGTTCTTAGCCCGTCCATCTAGGATTTTAGAACCCAAAGTTTAA 2676 46.94 MAMAIAQHRESSSGSITRHLDSTGKYVRYTSEQVEALERVYAECPKPSSLRRQQLVRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAAATTDASCDSVVTTPQPSRRDANNAAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLESSKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTTTLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLAVNSTKNFGTTSNPANSLTYPGGVLCAKASMLLQNVSPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIENEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRSSDAKGSQRTLDLTSSLEVGCGTSNAAGDASSSPSSRSVLTIAFQFPFESSMQDNVTNMAHQYVRSVISSVQRVAMAISPSGGSPALGPKLSPGSPEALTLAHWICKSYSFQLGSELIRSDSLESDSVLKNLWNHQDAILCCSLKQALPVFLFANQSGLDMLETTLVALQDITLDKIFDESGRKALCSDFPKLMQQGFAYLPGGICASTMGRHVSYEQAIAWKVLEADETTQAFFNGSSTSSIGTSETKMKMKMFVSTSGLQRLQFAKLKSQVPHEELYFKFLARPSRILEPKV 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2354639 2361564 + CmaCh20G004860.1 Cma20g00486 316300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00486 891 CDD START_ArGLABRA2_like 160 375 - -
Cma20g00486 891 SMART START_1 164 374 IPR002913 GO:0008289
Cma20g00486 891 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Cma20g00486 891 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Cma20g00486 891 Gene3D - 201 380 IPR023393 -
Cma20g00486 891 Pfam START domain 165 372 IPR002913 GO:0008289
Cma20g00486 891 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 828 - -
Cma20g00486 891 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 828 IPR044830 GO:0003700
Cma20g00486 891 CDD bZIP 77 116 - -
Cma20g00486 891 Pfam Homeodomain 26 83 IPR001356 GO:0003677
Cma20g00486 891 SMART HOX_1 22 88 IPR001356 GO:0003677
Cma20g00486 891 CDD homeodomain 25 85 IPR001356 GO:0003677
Cma20g00486 891 Pfam MEKHLA domain 697 829 IPR013978 -
Cma20g00486 891 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289
Cma20g00486 891 SUPERFAMILY Bet v1-like 164 376 - -
Cma20g00486 891 Coils Coil 80 121 - -
Cma20g00486 891 Gene3D - 19 91 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00895 Cma20g00486 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00818 Cma-Chr12:5996218 Cma20g00486 Cma-Chr20:2354639 0 dispersed
Cma17g00776 Cma-Chr17:6215474 Cma20g00486 Cma-Chr20:2354639 0 dispersed
Cma02g00895 Cma-Chr2:5310591 Cma20g00486 Cma-Chr20:2354639 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37002 PF01852 START 1.70E-46 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00486 K09338 - csv:101215773 1567.75