Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00489 ATGGGTCTTTTCTTCTTCCTGTTCTTCCATCTGGGCATTCAAATGAAAGAAGCAGAGAAAAGCTTAGATCCTCAACTATGGCATGCCTGTGCGGGAGGCATGGTCCAGATGCCTGCAATTAACTCCAAGGTTTTCTACTTCCCTCAGGGCCACGCCGAGCACGCTCAGGCCACCGTCGATTTCACCTCCTCACTCAGAATCCCGCCTCTTATTCTTTGTCGAGTGCTCGCCGTTAAGTTCTTGGCTGACCCTGAAACGGATGAAGTTTTTGCCAATGTAAGTTTGGTTCCACTGGCGAACAACGACCTCAATTTCGAGGAAGAGGGTGGTTTTGGGGGTAATGGGTCGGATAATAACATGGAGAAGCCGGCTTCCTTTGCCAAGACGTTGACCCAATCCGATGCTAACAACGGCGGTGGATTCTCGGTTCCGAGATACTGTGCGGAGACGATATTTCCGCGACTGGATTATACGGCGGATCCGCCGGTTCAGACGGTGATTGCTATGGATGTTCACGGTGTGGTTTGGAAGTTCCGGCATATTTACAGGGGAACACCTCGCCGGCATTTATTAACTACTGGGTGGAGTAGTTTTGTGAATCAGAAAAAACTCGTCGCCGGCGATTCTATTGTTTTTCTAAGATCCAAACATGGCGACCTCTGCGTCGGGATCCGGCGAGCCAAACGGGCAATTGGGTGTGCCGCCGATCACCCATATGGCTGGAATCCCGGCGGTGGAAATTGTTTCCCACCATGTGGTGGATTGACGATGTTTCTGAGAGACGAAGACAACAACAAGTTGAGTAGAAAAGGGTCTGTAAGTTCCAGTGGTGGCGGTGGGAATTTGAGGGGAAAAGGCAAAGTAAGGCCGGAATCAGTGATCGAAGCAGCGGCGCTTGCGGCGAGTGGGCAGCCATTTGAGGTGGTTTATTACCCTCGTGCCAGCACGCCGGAGTTCTGTGTCAAGGCTTCATCGGTGCGAGCTGCCATGAGGATCCAATGGTGCTCTGGTATGAGATTCAAAATGCCATTTGAAACAGAGGATTCTTCTCGGATCAGTTGGTTCATGGGAACCACTTCCTCTGTTCAAGTAGCTGACCCAATCCGCTGGCCTAATTCTCCATGGCGGCTCCTCCAGGTGACATGGGATGAGCCAGATTTGCTACAAAATGTGAAGCGGGTTAGCCCATGGTTGGTCGAGCTCGTATCGAACATGCCCGTCATTCAACTATCACCATTCTCGTCGCCGAGAAAGAAGTTTCGACTGCCACAGATCCCAGACATTCCTCTCGACAGCCAATTCCCGCTGTCGTCATCGTCGTCATCGTTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCACTTTGGAATATCTTTATCAGATTTCCATCTCAACAACAAACTGCAATTGGGGCTGGTTCCATCCAGTTTTCAGCAGCTTCATTTTCACTCTAGAATTTCCAATACAGACCATACTCGGAGCTCATCGGCATTGCTTAACGGGGAAAAGACCGGTCCGAAATTGGAACGATCCGATTCGGTGAAGAAGAAGCATCAGTTTTTACTTTTTGGTCAACCTATACTTACTGAACAGCAAATCTGTTGCAGCTCTTCTAGTGACATTCATCAAGTTTCTCCAAACAAGTCAGACACCGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTCATGGAGTCGGAAGACGTGGGTCGAACGCTCAACCTTTCAGTCATCAGCTCGTACGAAGAACTATACAGGAGGCTAGCCTACATGTTTGGAATGGAAAAACCAGACATTCTTAGCCATGTCTTGTATCAAGATGCAACAGGTGCTGTGAAACAAGCTGGAGACAAACCATTCAGTGATTTCATCAAAACAGCTCGAAGATTAACGATTTTAACAGACGAATCGGGTTCCGACAAGATGGGAAGAAGGACATTGATGGATGGCGTCCTCAGTGGTGAGAATGGACGACTAGATGCCTCAAACAAGACTGGTCCCTTAAGCATATTGGCCTAG 2073 49.01 MGLFFFLFFHLGIQMKEAEKSLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLILCRVLAVKFLADPETDEVFANVSLVPLANNDLNFEEEGGFGGNGSDNNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAMDVHGVVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRSKHGDLCVGIRRAKRAIGCAADHPYGWNPGGGNCFPPCGGLTMFLRDEDNNKLSRKGSVSSSGGGGNLRGKGKVRPESVIEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTTSSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSSPRKKFRLPQIPDIPLDSQFPLSSSSSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTHFGISLSDFHLNNKLQLGLVPSSFQQLHFHSRISNTDHTRSSSALLNGEKTGPKLERSDSVKKKHQFLLFGQPILTEQQICCSSSSDIHQVSPNKSDTELGLDIGHCKVFMESEDVGRTLNLSVISSYEELYRRLAYMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDESGSDKMGRRTLMDGVLSGENGRLDASNKTGPLSILA 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2380923 2383766 - CmaCh20G004890.1 Cma20g00489 316303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00489 690 CDD B3_DNA 125 226 IPR003340 GO:0003677
Cma20g00489 690 Gene3D - 124 228 IPR015300 -
Cma20g00489 690 MobiDBLite consensus disorder prediction 266 287 - -
Cma20g00489 690 Gene3D - 575 659 - -
Cma20g00489 690 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Cma20g00489 690 SMART B3_2 126 228 IPR003340 GO:0003677
Cma20g00489 690 ProSiteProfiles PB1 domain profile. 575 655 IPR000270 GO:0005515
Cma20g00489 690 PANTHER AUXIN RESPONSE FACTOR 16 561 - -
Cma20g00489 690 SUPERFAMILY DNA-binding pseudobarrel domain 122 230 IPR015300 -
Cma20g00489 690 Gene3D - 334 407 - -
Cma20g00489 690 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Cma20g00489 690 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 561 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma20g00489 690 PANTHER AUXIN RESPONSE FACTOR 571 664 - -
Cma20g00489 690 Pfam Auxin response factor 296 379 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma20g00489 690 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 571 664 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00897 Cma20g00489 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00140 Cma-Chr12:610877 Cma20g00489 Cma-Chr20:2380923 5.64E-105 dispersed
Cma20g00489 Cma-Chr20:2380923 Cma10g00017 Cma-Chr10:64046 8.54E-76 dispersed
Cma15g00461 Cma-Chr15:2049668 Cma20g00489 Cma-Chr20:2380923 0 wgd
Cma02g00897 Cma-Chr2:5336352 Cma20g00489 Cma-Chr20:2380923 0 wgd
Cma20g00489 Cma-Chr20:2380923 Cma03g01236 Cma-Chr3:8185388 5.30E-171 wgd
Cma20g00489 Cma-Chr20:2380923 Cma04g02570 Cma-Chr4:17655759 0 wgd
Cma20g00489 Cma-Chr20:2380923 Cma07g00923 Cma-Chr7:4422962 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37003 PF02362 B3 1.70E-21 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00489 - - bhj:120088819 1171.38