Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00493 ATGGCTTTTGGTAGTTCTAAATCCGTTAGGTTCCAAGACACTCTTGAATCATCTACCTTGCCCGCTATCAATGGTGGCGGTGTGACGAAGATCGTATACAACATCGATGGCACACAAATAGCGGATTCTAGCAGCAAGAGAACTGCATCTTCTGGGAAGTCTGGAAGATCATTAAGAGCTAAGGTTTTGTCTAGAGTTTTCTCAGAGGATTATGAGAGAGTACAACGAAAAATATTGGATCCTAGAGGACAAGCGATAAGGCGATGGAATAAGATATTTTTAGTAGCTTGTTTAGTCTCGTTGTTTGTAGACCCTCTTTTCTTTTACTTGCCCATGGTCCGGGACGAGGAGTGCATCGATATAGGAGTAGGTGTCGAAGTTGTCCTCACAACTATAAGATCGATAGCTGATCTTTTCTACACAATTCAGATTTTTGTTAAGTTTCGTACAGCTTATGTTGCGCCTTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATAGATCCTTGTAAGATAGCAATAAGGTATCTACGCCATGGTTTCTGGATTGATCTCATTGCAGCCGTGCCAGTTCCTCAGGTACTGATCTGGATTGTCATCCCCAACCTTAGTGGCTCGACAATGACGAACACCAAGAACTTCCTAAGGTTCTTTCTCATATTTCAGTACCTCCCAAGGCTTTTTCTCATATTTCCGCTCTCGACACAAATCGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACTTGATTCTTTATATGTTGGCAAGTCATGTTTTAGGAGCATGCTGGTACCTTCTTTCAATCGAGCGACAAGAAGCATGTTGGAGAAGACTTTGTACGGTTGAAAAATCTTGTAACGATGGATTCTTCGACTGTCATAAGGTCGATGACCCTCAAAGGGATTCGTGGTTTAATACAAGCAACATTAAAACTTTATGCAATCCAGATGATCCCTTTTATCAATTCGGTATATATGGTGACGCGATAACTTTCCATGTCACAACCTCTCCATTTTTCAACAAGTACTTCTATTGTCTTTGGTGGGGATTGAAAAATCTCAGTTCTTTGGGACAAAATCTTGCCACAAGCACTTTTGTTGGTGAAATAATTTTTGCCATAATTGTAGCCACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGTAATATGCAGAAATACCTCCAATCGACGACTGTTCGATTGGAAGAGTGGAGAATAAGAAGAACCGATACAGAACAATGGATGCATCATAGGCAGCTACCTCCCGAGCTCAGACAATCTGTCCGCAGATATGATCAGTATAAGTGGATAGCAACTCGAGGCGTTGATGAAGAAGCCCTTCTTAGAAGCCTTCCCTTGGATCTCCGTAGAGACATCAAACGTCACCTTTGCCTCGACCTTGTTCGACGGGTTCCATTGTTTGATCAAATGGATGAAAGAATGCTCGATGCAATATGCGAGAGACTTAAACCTGCCTTGAGTACAGAAGGCACGTTTCTCGTTCGAGAAGGCGACCCTGTCAATGAAATGTTGTTTATAATCAGAGGCCATCTTGATTCATACACCACGAATGGCGGTAGAACCGGATTTTTCAACTCCTGTCGTATTGGCCCGGGTGATTTCTGTGGTGAGGAGCTGCTAACTTGGGCGCTCGACCCTCGTCCAAGCATTGTACTTCCTTCTTCCACTCGAACTGTCAAAGCCATCTCTGAGGTAGAAGCATTTGCTCTCATAGCAGAGGACTTGAAATTCGTATCCTCCCAGTTCAGAAGACTCCATAGCAAACAACTGAGACACAAGTTTCGATTTCACTCGCATCAATGGCGAACGTGGGCTGCGTGCTTTGTTCAAGCTGCATGGCGGCGATATAAGAGACGCAAAGAACGAGCTGAGCTCAGGGCTAGAGAGAGCTATCCAGCTACCAAAGTCGAGTCCCCACATTCACCACCAATGGCATCAAACTTGGATTCACGTTCAGAAAATGCTCGAAGGGGTATGAATAAGCGTTCTGTATCGGATGCTGGGGTCGTAAGCTCGTTGCAAAAGCCAGAAGAGCCTGACTTCTCCATTGTTGAAGAATGA 2103 44.13 MAFGSSKSVRFQDTLESSTLPAINGGGVTKIVYNIDGTQIADSSSKRTASSGKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQAIRRWNKIFLVACLVSLFVDPLFFYLPMVRDEECIDIGVGVEVVLTTIRSIADLFYTIQIFVKFRTAYVAPSSRVFGRGELVIDPCKIAIRYLRHGFWIDLIAAVPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYLPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRRLCTVEKSCNDGFFDCHKVDDPQRDSWFNTSNIKTLCNPDDPFYQFGIYGDAITFHVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWIATRGVDEEALLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSIVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFHSHQWRTWAACFVQAAWRRYKRRKERAELRARESYPATKVESPHSPPMASNLDSRSENARRGMNKRSVSDAGVVSSLQKPEEPDFSIVEE 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2405631 2409870 - CmaCh20G004930.1 Cma20g00493 316307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00493 700 MobiDBLite consensus disorder prediction 641 700 - -
Cma20g00493 700 CDD CAP_ED 480 611 IPR000595 -
Cma20g00493 700 SUPERFAMILY cAMP-binding domain-like 410 605 IPR018490 -
Cma20g00493 700 ProSiteProfiles cAMP/cGMP binding motif profile. 480 577 IPR000595 -
Cma20g00493 700 PRINTS EAG/ELK/ERG potassium channel family signature 144 153 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma20g00493 700 PRINTS EAG/ELK/ERG potassium channel family signature 261 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma20g00493 700 PRINTS EAG/ELK/ERG potassium channel family signature 349 366 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma20g00493 700 PRINTS EAG/ELK/ERG potassium channel family signature 375 386 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma20g00493 700 PRINTS EAG/ELK/ERG potassium channel family signature 393 402 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma20g00493 700 PRINTS EAG/ELK/ERG potassium channel family signature 443 450 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma20g00493 700 Gene3D Jelly Rolls 478 598 IPR014710 -
Cma20g00493 700 Gene3D - 85 404 - -
Cma20g00493 700 PANTHER - 7 699 - -
Cma20g00493 700 Gene3D Helix hairpin bin 407 471 - -
Cma20g00493 700 SMART cnmp_10 480 611 IPR000595 -
Cma20g00493 700 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 699 - -
Cma20g00493 700 SUPERFAMILY Voltage-gated potassium channels 80 402 - -
Cma20g00493 700 Pfam Ion transport protein 89 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00858 Cma-Chr12:6341807 Cma20g00493 Cma-Chr20:2405631 0 dispersed
Cma16g00810 Cma-Chr16:4474722 Cma20g00493 Cma-Chr20:2405631 7.33E-129 transposed
Cma02g00901 Cma-Chr2:5361560 Cma20g00493 Cma-Chr20:2405631 0 wgd
Cma20g00493 Cma-Chr20:2405631 Cma03g01233 Cma-Chr3:8164935 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00493 K05391 - csv:101210775 1317.75