Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00494 ATGGCCAAAAAAGCGACACCAGCTACGTCGACGTATTCTCCCTCTCCTACCACCCACAAAACCAGGCCACCCATCTTCAGGAGCGACGACGTCGACTGGGTTCGCCCTGATGGCCGAGCCTTCCACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCGGAGTTTGGGAACACCAAGGTCATTGTTTCTGTATTCGGCCCTAGAGAAAGTAAGAAAGCAATGATGTATAGTGATATTGGCCGGCTCAATTGTAGCGTCAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGAGTTCTCCTCAATGCTACATAAAGCTTTAGAAGGGGCAATAATATTGGAGACATTCCCAAAGACAACTGTGGATGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGCGATCTTCCTGTTGTAATATCATGTGCTAGTCTTGCTCTTGCCGATGCTGGGATTATGCTGTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGCAAGAATCTTCTTATTGATCCTGCATTGGAAGAGGAAAACTACCAAGATGGAAGTCTGATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACTATTACAGGCGAATGGTCAACCGCTAAAATTAATGAGGGTATGCAGCTTTGTCTTGATGCTTCGTGTAAGCTTGTGACGATCATGCGGTCATGCTTGAAGGAATCTGCCGCCACGGTTTCAGAGGAATAA 777 46.59 MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2412074 2416088 - CmaCh20G004940.1 Cma20g00494 316308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00494 258 Gene3D - 31 256 IPR027408 -
Cma20g00494 258 CDD RNase_PH_MTR3 44 250 - -
Cma20g00494 258 Pfam 3' exoribonuclease family, domain 1 43 167 IPR001247 -
Cma20g00494 258 PANTHER EXOSOME COMPLEX COMPONENT MTR3 15 252 - -
Cma20g00494 258 PANTHER EXOSOME COMPLEX COMPONENT 15 252 - -
Cma20g00494 258 MobiDBLite consensus disorder prediction 1 22 - -
Cma20g00494 258 SUPERFAMILY Ribonuclease PH domain 2-like 169 256 IPR036345 -
Cma20g00494 258 SUPERFAMILY Ribosomal protein S5 domain 2-like 32 198 IPR020568 -
Cma20g00494 258 Pfam 3' exoribonuclease family, domain 2 171 232 IPR015847 -
Cma20g00494 258 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00901 Cma20g00494 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00255 Cma-Chr12:1295756 Cma20g00494 Cma-Chr20:2412074 2.91E-14 dispersed
Cma20g00494 Cma-Chr20:2412074 Cma04g00280 Cma-Chr4:1379121 1.93E-23 dispersed
Cma20g00494 Cma-Chr20:2412074 Cma02g00901 Cma-Chr2:5361560 9.10E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00494 K12587 - csv:101217447 478.018