Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00495 ATGTCAGAAGATACAATGAAGCGCGAAGTGGCAACCACCATTATCTCTTTAATAAGCTTTATCTTGATGCAACAAGCCTTTTGTGCTGACACTTACGATACGTCCACCCCTGGCAACTGGACGTGTAGATGTTTTTCTCCATACCAAGAAAATCAGAAATTAACACTTGGTGCAAACTGTTCTACATCTTGTTCATGTACGCAAGATGTTGGGGTAATTGGAATGTGGACATGCATATGTGTAACCGATGGCTTCCCAAAAGTTGCAGCCAATCCCCGTGATTCTGACTGTTTTACCTCCTGCAACTGCTCTTCTGGACTGCCTCCGGAGTCACCATCTTCTAAAAGGCATATTTCGAGCAATGTGGTTGTGATTATTCTCTCACTATGTGTAATAATCATAACATTAGCATTCTTCATCTTAGTGGTTTGCTATCTTTGTCGAAGGGACAAGTGCCGTGCTCAAACTCCAATATTTTCGTTAGAAAAGCTAATGAGCTACAACAGCTTGACCAACTTAATTAGTCACAAGAGTTCTTCACCACCAGATAGTAAGGTTATGATGGGTTCCCCTGTGAATAACATCAAAGGATGCTTTTTCATGAACCAATGCTTGTTGAGGACAAAATCTAGGAGTCTGTGTGGGATAATCATCCAATTCTCATACTCGGAGTTGGAAAATGCCACAAATAAGTTTTCAAGCTCCCATCTTGTTGGACGTGGAGGAAGTAGTTTTGTTTATCGTGGTGAGTTGAAGGACAGTAGAACAGTGGCAGTAAAGCGGCTCAATATTCAAGGAGGACCGGATGTGGACTACTTGTTCTTAACAGAAATTCAATTGTTATCAAGGCTTCATCATTGTCACGTGGTGCCTCTACTTGGTTATTGCACAGAATCAAGGGGGAAACATACTGAAAGGCTTTTGGTATATGAATACATGCCAAAGGGTAATTTAAGAGACTGTTTGGATGCAGCTTCAGGGGAAAAACTGGATTGGAGTACTCGTGTTACAATTGCTTTAGGAGCTGCAAGAGGCTTGGAGTATCTTCATGAAGCAGCTGCTCCCAGAATTTTGCATAGGGATGTCAAGTCAACAAATATTCTTTTGGATAAAGATTGGAGAGCAAAAATAACAGACCTTGGTATGGCCACAAGGTTAAGAGGTGATGATCTTCCTAGCTGTTCCAGTTCTCCTGCAAGAATGCAGGGGACTTTTGGGTATTTTGCACCGGAGTATGCAATTGTTGGAAAAGCCTCTTTGAAGTCAGATGTCTTTAGTTTTGGAGTAGTTCTTCTCGAGCTTATAACGGGTCAGCATCCCATCCATAAATCAGCAAGCAAAGGAGAGGAAAGCCTTGCAATCTGGGCTGCGCCCCGATTGCAAAATAGTAGGCGAGTCATTACCGAGTTGCCTGATCCGCATTTAGATGGACTGTTCCCGGAGGAAGAGATGCAAATAATGGCTTATTTAGCAAAAGAGTGCTTGCTGTTGGACCCTGATGCTAGACCCACCATGACTGAAGTTGTTCAAGTACTTTCAAACATAGCTCCAGAAAAATCAAGAAGGAATAACATTTCTGCAAACGTTTTTCAGGGGAGGTTGTCAGCCTGTTGTGAGGAAAGTGTACGAGACAATGTAAGGGACGAAACGAATCCTATAGGGAAACAAGTCCATACAGAGGTGACTCCCATTGATGACATGACGACAAGGCAAGCTTCATCCCGCAAATGGCTCGATCGCCATTCATTACCATTGGATATTGATCGTTCACTTTGTGCTGGCAACTATGGCAACCAAGATGTTGTTTCTTTCGAGTGCATCGAAAGACCTGTACCCCCCTCGACTTCTGAGGGCAATAATCTCCAAGTCCAAGCCTCGGATGATGAAACAGTAGACTTGACTGAGCCTTGGCTCGAGTCATTCTGCATTGTGAATGTTAATAAATCTCCCTCATAA 1956 42.94 MSEDTMKREVATTIISLISFILMQQAFCADTYDTSTPGNWTCRCFSPYQENQKLTLGANCSTSCSCTQDVGVIGMWTCICVTDGFPKVAANPRDSDCFTSCNCSSGLPPESPSSKRHISSNVVVIILSLCVIIITLAFFILVVCYLCRRDKCRAQTPIFSLEKLMSYNSLTNLISHKSSSPPDSKVMMGSPVNNIKGCFFMNQCLLRTKSRSLCGIIIQFSYSELENATNKFSSSHLVGRGGSSFVYRGELKDSRTVAVKRLNIQGGPDVDYLFLTEIQLLSRLHHCHVVPLLGYCTESRGKHTERLLVYEYMPKGNLRDCLDAASGEKLDWSTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKDWRAKITDLGMATRLRGDDLPSCSSSPARMQGTFGYFAPEYAIVGKASLKSDVFSFGVVLLELITGQHPIHKSASKGEESLAIWAAPRLQNSRRVITELPDPHLDGLFPEEEMQIMAYLAKECLLLDPDARPTMTEVVQVLSNIAPEKSRRNNISANVFQGRLSACCEESVRDNVRDETNPIGKQVHTEVTPIDDMTTRQASSRKWLDRHSLPLDIDRSLCAGNYGNQDVVSFECIERPVPPSTSEGNNLQVQASDDETVDLTEPWLESFCIVNVNKSPS 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2417209 2423411 - CmaCh20G004950.1 Cma20g00495 316309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00495 651 ProSiteProfiles Protein kinase domain profile. 232 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00495 651 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE NCRK ISOFORM X1 6 648 - -
Cma20g00495 651 Gene3D Phosphorylase Kinase; domain 1 206 312 - -
Cma20g00495 651 ProSitePatterns Protein kinases ATP-binding region signature. 238 260 IPR017441 GO:0005524
Cma20g00495 651 PANTHER OS01G0750732 PROTEIN 6 648 - -
Cma20g00495 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 357 369 IPR008271 GO:0004672|GO:0006468
Cma20g00495 651 Pfam Protein kinase domain 234 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00495 651 Gene3D Transferase(Phosphotransferase) domain 1 313 537 - -
Cma20g00495 651 SUPERFAMILY Protein kinase-like (PK-like) 215 512 IPR011009 -
Cma20g00495 651 CDD STKc_IRAK 238 515 - -
Cma20g00495 651 SMART serkin_6 232 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00495 Cma-Chr20:2417209 Cma14g00938 Cma-Chr14:4862905 5.52E-72 dispersed
Cma20g00495 Cma-Chr20:2417209 Cma15g00198 Cma-Chr15:963133 2.54E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69390 PF00069 Pkinase 3.00E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00495 - - cpep:111777490 1273.84