Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00497 ATGGAACCCACCGGCTGCACCAATGGCCACGTTTCAGTGGATGGGCTTTGCGTGAAGGATCCATTGTACTGGCGGGCAGCGGCGGAGGGGCTCAAAGGTAGCCATGTCGATGAGGTGAAGAGAATGGTGGAGGAGTACCGACGGGCGGTGGTCCGTCTCGGTGGAGAGAGCCTGACAATTGGACAGGTGGCGGCAGTTGCCTTGCACGACGGCGGAGTGCGAGTGGAACTGAACGAATCGGCAAGAGAAGGAGTTAAGGCCAGCAGTGATTGGGTGATGGACAGTATGAAGAAAGGAACTGATAGCTACGGCGTCACTACTGGGTTCGGTGCTACCTCTCACCGTAGGACCAACCAAGGCGCTGCCTTGCAGAAGGAACTTATTAGGTTTTTGAACGCTGGAATATTCGGGAATGGAACGGAGACGAGCCACACGCTGCCGCACACGGCCACAAGAGCTGCCATGTTGGTCAGAATCAACACCCTTCTCCAAGGCTATTCCGGCATCAGATTTGAGATTTTGGAGTGTATAACAAAGCTTCTCAACCACAACGTGACACCTTGCCTTCCCCTGCGAGGCACCATCACGGCTTCCGGTGATTTGGTACCCTTTTCCTACATCGCTGGTCTCTTGACTGGCCGACCCAATGCCAAGGCTGTTGGCCCAGCCGGTCGGGTGGTTGACGCTGGAGCAGCCTTTAAACTCGCCGGCATTGGCGGTGGGTTCTTCGAGTTGCAGCCTAAGGAGGGTCTTGCACTTGTGAATGGCACGGGCGTTGGGTCTGGTTTAGCGGCTATTGTTCTGTTTGAAGCCAATTTATTGGCTCTTTTGTCTGAAGTGATATCAGCCATTTTTGCTGAAGTAATGCAGGGGAAGCCAGAGTTCACCGACCATTTGACTCATAAATTGAAGCACCATCCAGGTCAAATCGAGGCAGCTGCCATTATGGAGCACATTTTGGATGGGAGTGCTTTTGTTAAAGACGCTAAGAAATTACACGAACTAGACCCACTTCAAAAGCCAAAACAAGACCGATATGCTCTTCGAACTTCACCTCAATGGTTAGGCCCTCAAATTGAAGTGATTCGACATTCGACGAAATCAATCGAGAGAGAGATCAACTCGGTGAACGACAATCCATTGATCGATGTTTCGAGGAACAAAGCTATACATGGAGGCAATTTTCAAGGAACTCCAATTGGAGTATCCATGGACAATACTAGATTAGCTCTTGCCTCAATTGGGAAGCTTTTGTTTGCTCAATTCTCCGAGCTTGTGAATGATTTCTACAACAATGGGTTACCTTCAAATCTCTCAGGAGGAAGTAATCCAAGCTTGGATTATGGATTCAAAGGAGCTGAAATCGCCATGGCTTCCTACTGCTCGGAGTTACAATTCTTGGCGAATCCTGTCACCAATCATGTTCAAAGCGCAGAGCAACACAATCAAGATGTAAACTCATTAGGACTAATCTCTTCGAGAAAAACAGCTGAGGCCATAGATATCTTGAAGCTAATGAGCACGACATTCCTAGTGGCACTCTGCCAAGCCATAGATTTGAGACACATAGAGGAGAATCTGAAGAACACAGTGAAGAACACAGTGAGTCAAGTGGCTAAGAAGGTATTAACCATTGGAGTAAACGGAGAGCTTCATCCTTCACGATTCTGCGAGAAGGATTTGCTCAAAGTCATCGACAGAGAACATGTTTATGCTTACATTGACGACCCCTGCAGCATGACATATCCATTAATGCAGAAGCTAAGGCAAGTTTTTGTAGAACATGCATTGAACAACGATGATGATCTGAAGAACACAAACGCTTCAATCTTCTTAAAGATTGGAGCTTTCGAGGAGGAACTGAAAACCCATTTGCCTAAAGAAGTAGAAAGTGGAAGATTAGCCATTGCTAAAGGGAAAGCGACGATTCCTAACAAGATCAAGGATTGTAGATCATACCCTCTTTATAGATTTGTTAGAGAAGAACTGGGAACGGCGCTGTTGACAGGGGAAAAGGTTAGGTCACCAGGGGAAGAATTTGACAAGGTTTTTACTGCAATTTGTGAAGGGAAGATCATTGATCCTCTGCTTGAATGCCTTGAGCGTTGGGATGGGACTCCTCTTCCTGTAAATTAA 2136 47.38 MEPTGCTNGHVSVDGLCVKDPLYWRAAAEGLKGSHVDEVKRMVEEYRRAVVRLGGESLTIGQVAAVALHDGGVRVELNESAREGVKASSDWVMDSMKKGTDSYGVTTGFGATSHRRTNQGAALQKELIRFLNAGIFGNGTETSHTLPHTATRAAMLVRINTLLQGYSGIRFEILECITKLLNHNVTPCLPLRGTITASGDLVPFSYIAGLLTGRPNAKAVGPAGRVVDAGAAFKLAGIGGGFFELQPKEGLALVNGTGVGSGLAAIVLFEANLLALLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAFVKDAKKLHELDPLQKPKQDRYALRTSPQWLGPQIEVIRHSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSGGSNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSTTFLVALCQAIDLRHIEENLKNTVKNTVSQVAKKVLTIGVNGELHPSRFCEKDLLKVIDREHVYAYIDDPCSMTYPLMQKLRQVFVEHALNNDDDLKNTNASIFLKIGAFEEELKTHLPKEVESGRLAIAKGKATIPNKIKDCRSYPLYRFVREELGTALLTGEKVRSPGEEFDKVFTAICEGKIIDPLLECLERWDGTPLPVN 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2435852 2439374 + CmaCh20G004970.1 Cma20g00497 316311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00497 711 Gene3D Fumarase/aspartase (Central domain) 259 705 - -
Cma20g00497 711 PANTHER HISTIDINE AMMONIA-LYASE 8 711 IPR001106 -
Cma20g00497 711 CDD PAL-HAL 56 521 IPR001106 -
Cma20g00497 711 Gene3D - 524 645 IPR023144 -
Cma20g00497 711 Pfam Aromatic amino acid lyase 58 533 IPR001106 -
Cma20g00497 711 Gene3D - 12 257 IPR024083 -
Cma20g00497 711 SUPERFAMILY L-aspartase-like 20 710 IPR008948 GO:0003824
Cma20g00497 711 PANTHER AMMONIA-LYASE, PUTATIVE-RELATED 8 711 - -
Cma20g00497 711 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 20 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00919 Cma-Chr7:4376824 Cma20g00497 Cma-Chr20:2435852 0 dispersed
Cma07g00920 Cma-Chr7:4385994 Cma20g00497 Cma-Chr20:2435852 0 dispersed
Cma20g00497 Cma-Chr20:2435852 Cma03g01229 Cma-Chr3:8135610 0 wgd
Cma20g00497 Cma-Chr20:2435852 Cma07g00912 Cma-Chr7:4328216 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00497 K10775 - csv:101218156 1321.22