Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00522 ATGCTTTCTCTGCGTTCATGCTACTGTTTACGCCCCATTACATTGGCTCATCCTCAATTCAAGAAACTCATCTTCTCCAACAAACCTCCCTCTTTCAAACCCATTTTTCAGAATTTTGTTTCAGCAATGTCTTCTCGTCCTTCTGCTTTCGATGCTCTCATGTCCGGTGCTCGGGCCGCTGCCAAGAAGAAGCCTGTAAATTCTTCTCCTAAGAAGCGTAAAGCCCTAGATTCTTTAGACCCTCCTCCGAAACCTAACTCTTCCCTGGCTCTGGACTCAACGCCGCCTGTTGAATCGCAGTGCGTTAGTTCAACCTCAACTTTGGATAATCACGGAGATCCTAATCTGGTTAAGTCCGAGGAAGCTGTAGATTTGGGGGAAACCAAGTTGCGTCAGGATGATGGTGGGAAGTTTGGAGGCAAGATTGGGCCGGTTGCGAATAAGAAGTGCGCGTCTAGTGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATCCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAACTCGAAACAATTTGCATGTTGGAATGAGGGCGAACGGGTTCCATTTTTGTTTCTGTGTTTGGGGTTCGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACCGATATCGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACCGTGTATCTTTTGGCGAATAAGATTGCTCCCGCGCACGAAGGGCTCGAGTTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTTAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCCAAAGCAAGCCGTTCGTCACAATCCATGATGCGAAAGCCCGATGCTTTAACTATTACCAAAGTATTTGACTCATTTCGGCTGATTGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGCGAACCTTTGTATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGGCAAGCAGCTGTATATGCTGAAAAACATTCAACGCCCCCAGCGAACGTTCAATCTCCTCTAGAAGAGGGTGCTAAGATTGTAAAGCAGGTGTATTCTGTGCTCCCTGTTTATGATAAACTGGTCCCTGCGCTTCTTAATGGTGGTGTGTGGAACCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCTATGTTGGCAAAACCAACGAAGGGAGTCTCCGAGATCTTAAATAAATTCCAGGGTTTGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATTCATTACATGGAAGATGGTTCAGTTGAGATCTACAGTCGAAATGCTGAACGGAACACTGGAAAGTTCCCTGATGTTGTTCTCACGGTATCAAGGATAAAGAAACCATCTGTAAGATCGTTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAGCAGAAGATTTTGCCTTTTCAGATTCTGAGTACACGAGCTCGCAAAAACGTGGCCGTGAGCGATATTAAGGTTGAAGTGTGTGTATTTGCTTTTGATTTACTGTACCTTGATGGTCAACCACTTATTCAGAAAGAACTTAGTGTTCGTCGAGAGCATCTCTATGATTCATTTATTGAAGAAGCTGGATATTTTCAATTTGCCACAGCAATAACAACAAGCGACCTTGAGGAAATACAAAAATTCCTTGATGCATCTGTTGATCAAAGTTGTGAGGGTTTAATCATCAAAACATTGAACCGGGATGCTACTTACGAGCCTTCCAAGAGGTCACTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGTGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGCCGTGGGAAGCGTACAGGTGTCTATGGCGCATTTCTCCTTGCCTGTTATGACAATGACAATGAAGAATTTCAAAGCATTTGTAAGATTGGAACTGGTTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCAGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTTGGTTTGAACCTACCGAGGTTTGGGAGGTTAAAGCGGCAGACTTGACTATCAGCCCAGTTCATCGTGCAGGAGTCGGCATCGTGGATTCCAACAAGGGAATTTCTCTTCGGTTTCCACGTCTTGTTCGTGTAAGGAAAGACAAAACTCCAGAGGAGGCCACATTGTCTGAGCAGGTTGCCGACATGTATAATGCTCAGAAACTCAACCACCAAAACAATCAAGATGACAATGATGAAGACTGA 2415 43.85 MLSLRSCYCLRPITLAHPQFKKLIFSNKPPSFKPIFQNFVSAMSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDPPPKPNSSLALDSTPPVESQCVSSTSTLDNHGDPNLVKSEEAVDLGETKLRQDDGGKFGGKIGPVANKKCASSVQERTAKLKSSIPELKKKAKDFNSKQFACWNEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTITKVFDSFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPANVQSPLEEGAKIVKQVYSVLPVYDKLVPALLNGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQKELSVRREHLYDSFIEEAGYFQFATAITTSDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSNKGISLRFPRLVRVRKDKTPEEATLSEQVADMYNAQKLNHQNNQDDNDED 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2513316 2519574 - CmaCh20G005220.1 Cma20g00522 316336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00522 804 MobiDBLite consensus disorder prediction 114 136 - -
Cma20g00522 804 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 172 423 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cma20g00522 804 PANTHER DNA LIGASE 1 41 804 - -
Cma20g00522 804 Gene3D DNA ligase/mRNA capping enzyme 461 586 - -
Cma20g00522 804 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 248 787 IPR000977 GO:0003910|GO:0005524|GO:0071897
Cma20g00522 804 Pfam ATP dependent DNA ligase domain 432 636 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cma20g00522 804 CDD OBF_DNA_ligase_I 644 789 - -
Cma20g00522 804 MobiDBLite consensus disorder prediction 90 113 - -
Cma20g00522 804 CDD Adenylation_DNA_ligase_I_Euk 421 639 - -
Cma20g00522 804 MobiDBLite consensus disorder prediction 60 138 - -
Cma20g00522 804 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 456 464 IPR016059 GO:0003909
Cma20g00522 804 Gene3D - 167 434 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cma20g00522 804 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 424 642 - -
Cma20g00522 804 Gene3D - 442 640 - -
Cma20g00522 804 Pfam ATP dependent DNA ligase C terminal region 661 772 IPR012309 GO:0003910|GO:0006281|GO:0006310
Cma20g00522 804 SUPERFAMILY Nucleic acid-binding proteins 644 790 IPR012340 -
Cma20g00522 804 Pfam DNA ligase N terminus 190 365 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cma20g00522 804 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 41 804 - -
Cma20g00522 804 ProSitePatterns ATP-dependent DNA ligase signature 2. 610 636 IPR016059 GO:0003909
Cma20g00522 804 Gene3D - 641 803 IPR012340 -
Cma20g00522 804 ProSiteProfiles ATP-dependent DNA ligase family profile. 538 674 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00718 Cma-Chr5:3839118 Cma20g00522 Cma-Chr20:2513316 7.98E-30 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00522 K10747 - csv:101213447 1424.45