Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00533 ATGGCGAACGGTACGGCTCCGGATGAGTTTGTGGTGTTGTCACGAGTCCGGACTGGTCTCAAGCGCGAGTTTGCCTTTGCTTTGAAAGTTCAATCGGAGATTTGTGGGTCATTAGGTCGGACTCGTTCCAGGAGGTTGCCAAATGCGATTCTGGAGACTCCTACCTCCAAAAGGTTAAAGGGCTCAGTGAAGATGGAAACAAGTGGGGGCGAGGGGGAGGATGAGACTGCCCAGTTAAGGAGTTCTGAGGTGGGAAAGGTCGAGAAAGTTAAGAGTATGGAGGACATGGCGGATTCAATGAGTGAAGAGGCCAAGAGTGATATAGTAGACCTTGTAAGCGATGAAGAACCGAAGAGTCAGGTGGATGAATCTACGGGTGAAACTGGAACTATGGATGAGTCATCGAATAGTATTGGTATAGAAGAATCAAAGGAGGAACTGTTGGATAGTGAGGATCCAATCAGCCATGGGACAGTGAATTTGGCAAGGGACAGGGCATTGGTTAATGAAAAAATGGAGGAGGAGGAGTCTAAGGATTTATCTTGGAATGAATTTGAAGGGGCTTTAACATGTGGGGATTTAGGGAAGGAGGGTAAAAATGTTCTCTCAGAGGAAGCAGTGAGTCGGTCAGAATCGATCATTGTTGTTAATGGTCAGTTGGGAAAGAAGATGGTTCAGCAGCCTCACAAGAGGTTTACCCGTTCGGCCTTAAATCAGAACTCGGAGTCCACGACAACGTCTGTAGGTGATCTTGCAAAATCTAATACGGGTATAACAATGCAAGTTATCACAAATGATGCTGAAAACAAATCAGAGGATGCCCCTAGTCTCTCAGCTACACCTCCGATGAAGATCGGAATGACAAAGCCGAAGAATGTGTCGACGAAGAGATTTCCCGCCAAGTTAAAGGACCTTCTGGAAACGGGTATTTTGGAGGGACTTCGAGTGAGATACATTAGAGGTTCTAAGATTAAAGCACAAGGAGACGCTGGGCTAGGAGGAGTAATCAGTGGCTCTGGGATAATTTGTTTCTGTAACAACTGCCAAGGAAATGAAGTTGTTTCTCCTACTTTATTTGAACTACATGCCGGTAGCTCGAATAAACGTCCACCAGAGTACATTTACTTGGAGAATGGGAATACCCTCCGGGACATCATGAACGCATGCCAAAATTTTTATTTCGACCAGACCGAAGAATTCATCAGAAGTGCAATTGGTTGTTCCTTGGTAAAAAGATCTGCTATCTGCCTGAGTTGCAAAGGTCGAATTCCTGAATCAGACCCCGGGAAGGCGATGCTACTTTGCTGTTCATGTATGAATTTGAAGAAGCCTCATGACAGCCCCATTCCCATAATCTTCAGTAATGAAAGAACTCCAAAACCAAATTTACTTCCCAAGTTATCTGATACTGCATCAAAGAGTGGTTCCAATCGTGGTAAAAGTCATGGAAGATTAACCAGAAAGGATCTAAGGCTGCATAAGTTAGTGTTTGAGGAAGATATATTACCCGATGGAACTGAGGTTGCATACTATGCTCGTGGGCAGGTTAGTCCCTCGCAATTTGAAGCTCATGCTGGCTGGGCATCAAGGCGCAAGCCTTATTTGCACATTTACACATCAAATGGGGTGTCTCTGCATGAGTTGTCCATATCTCTATCGAAAGGACGAAAGTTCTCCTCCAACGATAACGATGACTTGTGTAGCATTTGTGCAGACGGAGGGGATCTGTTGTGTTGTGATGGCTGCCCCAGGGCTTTTCACAGAGATTGTGTTCCTTTACCATGTATCCCTACTGGTACCTGGTACTGCAAATATTGCCAGAATTTGTTCCAAAAGGAAAAATTTGTGGAGCACAATGCAAATGCTGTTGCTGCTGGAAGGGTTGCTGGTGTTGATCCTATTGAACAGATAACAACGAGATGCATTCGAATTGTCAAAACTATGGAAGTGGAAGTTGGTGGATGTGCACTATGCAGATGCCATGACTTTAGCAAGTCCGGGTTTGGTCCTCGAACTGTTATTCTTTGTGATCAGTGTGAAAAGGAGTTTCATGTTGGCTGCTTAAAGGAACACAACATGGAAAATCTCAAGGAACTTCCCCAAGGAAAGTGGTTCTGTTGTCCTGAGTGCAACAGGATACACTCTGCACTGGAGAAGTTGGTGGCTTTAGGAGGAGAGAAGCTGCCCGAGTCTATTTTGGTCTCTGTTCAGAAAAAGATTGAAGACAAGGGTTCGGCAAGCATAAACAATCTTAAAATTCGATGGCGGGTCCTCAACTGGAAAATGTCGCCTTCCGATGAAACTAGATCACTGCTTTCGAAGGCCGTTTCTATTTTCCATTGGGCTGTTGAGAGTAATCTTGGGCAGTTCTATTTGCCGTGCAGGAGGAACATCAGGGGTCAAGAATTTGGTGGGATATACTGTGCAGTTCTAACTGTGAATGAATCTGTCGTGTCAGCGGGAATATTTCGTATATTTGGGGTTGAAGTAGCGGAGCTTCCATTAGTAGCAACAGATACCAACTTTCAAGGGCAGGGCTACTTCCAATCCTTGTATTCATGCATCGAGAGGTTCTTGGGATTTTTGAATGTGAAGAATCTCGTTCTGCCCGCCGCAGACGAAGCAGAGTCGTTGTGGATCAACAAGTTTGGATTCAGCAAGTACCCTCCCGAAGAGGTAATGGAGTACAAGAGACATTACCAGATGATGATCTTCCAAGGGACGTCGGTACTGCAGAAGGCGATACCGCAATATCGGATTCAGTACTCTGAGAAGTACTTCGACGACATTCACGAGTATAGGCATGTGGTGCTCCCACCCGACGTGGCAAAGTTGCTTCCGAAGAATCGCCTGCTCTCTGAAAATGAGTGGCGTGCACTTGGAGTTCAGCAGAGTCGTGGATGGGTGCACTATGCTATTCATCGTCCCGAGCCACATATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAGAATATGCTTGCTGCTAAATGA 3018 45.69 MANGTAPDEFVVLSRVRTGLKREFAFALKVQSEICGSLGRTRSRRLPNAILETPTSKRLKGSVKMETSGGEGEDETAQLRSSEVGKVEKVKSMEDMADSMSEEAKSDIVDLVSDEEPKSQVDESTGETGTMDESSNSIGIEESKEELLDSEDPISHGTVNLARDRALVNEKMEEEESKDLSWNEFEGALTCGDLGKEGKNVLSEEAVSRSESIIVVNGQLGKKMVQQPHKRFTRSALNQNSESTTTSVGDLAKSNTGITMQVITNDAENKSEDAPSLSATPPMKIGMTKPKNVSTKRFPAKLKDLLETGILEGLRVRYIRGSKIKAQGDAGLGGVISGSGIICFCNNCQGNEVVSPTLFELHAGSSNKRPPEYIYLENGNTLRDIMNACQNFYFDQTEEFIRSAIGCSLVKRSAICLSCKGRIPESDPGKAMLLCCSCMNLKKPHDSPIPIIFSNERTPKPNLLPKLSDTASKSGSNRGKSHGRLTRKDLRLHKLVFEEDILPDGTEVAYYARGQVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKGRKFSSNDNDDLCSICADGGDLLCCDGCPRAFHRDCVPLPCIPTGTWYCKYCQNLFQKEKFVEHNANAVAAGRVAGVDPIEQITTRCIRIVKTMEVEVGGCALCRCHDFSKSGFGPRTVILCDQCEKEFHVGCLKEHNMENLKELPQGKWFCCPECNRIHSALEKLVALGGEKLPESILVSVQKKIEDKGSASINNLKIRWRVLNWKMSPSDETRSLLSKAVSIFHWAVESNLGQFYLPCRRNIRGQEFGGIYCAVLTVNESVVSAGIFRIFGVEVAELPLVATDTNFQGQGYFQSLYSCIERFLGFLNVKNLVLPAADEAESLWINKFGFSKYPPEEVMEYKRHYQMMIFQGTSVLQKAIPQYRIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNMLAAK 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2550542 2557948 - CmaCh20G005330.1 Cma20g00533 316347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00533 1005 MobiDBLite consensus disorder prediction 455 484 - -
Cma20g00533 1005 MobiDBLite consensus disorder prediction 67 85 - -
Cma20g00533 1005 SUPERFAMILY FYVE/PHD zinc finger 648 712 IPR011011 -
Cma20g00533 1005 Pfam Cyclin-dependent kinase regulatory subunit 920 986 IPR000789 GO:0016538
Cma20g00533 1005 SUPERFAMILY Cell cycle regulatory proteins 903 999 IPR036858 GO:0016538
Cma20g00533 1005 CDD PHD1_AIRE 566 606 - -
Cma20g00533 1005 ProSitePatterns Zinc finger PHD-type signature. 567 606 IPR019786 -
Cma20g00533 1005 Gene3D - 911 1001 IPR036858 GO:0016538
Cma20g00533 1005 SUPERFAMILY FYVE/PHD zinc finger 555 609 IPR011011 -
Cma20g00533 1005 PANTHER AUTOIMMUNE REGULATOR 1 913 - -
Cma20g00533 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 553 637 IPR013083 -
Cma20g00533 1005 PRINTS Cyclin-dependent kinase regulatory subunit signature 919 933 IPR000789 GO:0016538
Cma20g00533 1005 PRINTS Cyclin-dependent kinase regulatory subunit signature 971 985 IPR000789 GO:0016538
Cma20g00533 1005 PRINTS Cyclin-dependent kinase regulatory subunit signature 956 970 IPR000789 GO:0016538
Cma20g00533 1005 PRINTS Cyclin-dependent kinase regulatory subunit signature 934 948 IPR000789 GO:0016538
Cma20g00533 1005 Gene3D - 765 910 - -
Cma20g00533 1005 MobiDBLite consensus disorder prediction 268 291 - -
Cma20g00533 1005 MobiDBLite consensus disorder prediction 112 138 - -
Cma20g00533 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 652 713 IPR013083 -
Cma20g00533 1005 ProSiteProfiles Zinc finger PHD-type profile. 564 609 IPR019787 -
Cma20g00533 1005 MobiDBLite consensus disorder prediction 59 85 - -
Cma20g00533 1005 SMART PHD_3 657 711 IPR001965 -
Cma20g00533 1005 SMART PHD_3 566 607 IPR001965 -
Cma20g00533 1005 Pfam Tify domain binding domain 334 389 IPR032308 -
Cma20g00533 1005 Pfam Tify domain binding domain 516 548 IPR032308 -
Cma20g00533 1005 MobiDBLite consensus disorder prediction 123 137 - -
Cma20g00533 1005 MobiDBLite consensus disorder prediction 465 479 - -
Cma20g00533 1005 PANTHER AUTOIMMUNE REGULATOR 1 913 - -
Cma20g00533 1005 SMART CKS_2 919 988 IPR000789 GO:0016538
Cma20g00533 1005 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 800 891 IPR016181 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01360 Cma-Chr2:7925774 Cma20g00533 Cma-Chr20:2550542 1.18E-09 dispersed
Cma02g01373 Cma-Chr2:8007504 Cma20g00533 Cma-Chr20:2550542 8.79E-49 dispersed
Cma13g00263 Cma-Chr13:2168852 Cma20g00533 Cma-Chr20:2550542 5.68E-45 dispersed
Cma14g00167 Cma-Chr14:673119 Cma20g00533 Cma-Chr20:2550542 4.76E-149 dispersed
Cma20g00533 Cma-Chr20:2550542 Cma08g00340 Cma-Chr8:1940676 1.19E-36 dispersed
Cma14g00246 Cma-Chr14:1065408 Cma20g00533 Cma-Chr20:2550542 6.69E-08 wgd
Cma02g01372 Cma-Chr2:8001240 Cma20g00533 Cma-Chr20:2550542 0 wgd
Cma20g00533 Cma-Chr20:2550542 Cma06g00412 Cma-Chr6:1905877 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00533 - - csv:101214170 1473.76