Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00555 ATGGAGATGAAGAAGGGATTTCCCATCGCAGTGATTAGCAAGTCCCCTTATCTGATACTTTGTCAAAGTAGTTGTAATGGTGGAAGCAATGGAGAGGGAGTTTTTGAATCCTGTTTGGGGATTGGAGTTTGTGGTCGGATTGAAAGAAACAGAACATTCTCAGATCATGTTTTCTCTTTGCAGCATTTGAATTCTGTACCTAATAGACTTGTTTATAATGGGAAGACTTCAAATTCTTGCATTTTCACTCAACAAGGTCGAAAGGGTATTAACCAGGACGCCATGGTTGTATGGGAAGACTTCATATCAGATGGTGCGATTTTCTGTGGCGTATTTGATGGTCATGGTCCACACGGTCACGTAGTTGCACGAAAGGTTAGAGATGTTCTGCCAAGAAAGCTTGTGTCATTCTGGCAGTCGTCTCAGTCGAAGCGTGATAGATCGGATAGAACTTCTTGTCTCGCGTGGAGTCGAAAGAATTCAGCAGATGGTGAAGGACAGGACATAGATGGGTCACAGGAGGACAGATCAAGTTATTTATGGAGAAGAACTTTCCTCAAATCATATAAAGCCATGGATAAGGAGCTCAAATCTGATCCCAAATTGGATTGTTTCTGTAGTGGCTGTACTGCCATCACTCTAGTGAAGCAGGGCTCGGATCTATTCGTGGGAAGTATTGGGGATTCTCGAGCGATTCTTGGATCGAAAGACAGCAGTGATTCTCTTGTAGCAACACAATTGACAGTAGATCTAAAGCCAGATCTGCCCAGAGAGGCTGAAAGGATAAAGAAGTGTAAAGGAAGGGTGTTTGCATTGCATGATGAACCAGAAGTGCCAAGAGTGTGGCTGCCATTTGACAATGCGCCAGGATTAGCCATGGCTCGAGCATTTGGCGACTTCTGTCTGAAGGACTATGGAGTTATCTCTATTCCCGAGTTCTCACACCGCGTGCTTACAGATAATGATCTGTTTGTTGTTCTTGCTTCAGATGGGGTTTGGGACGTATTGAGCAACGACGAGGTGGTTGAGATAGTTTATTCTGCCTTGACTCGGTCATTGGCAGCTCGAATGGTGGTAGACTTGGCTGCTCGGCAGTGGAAGCTCAAGTACCCTACTTCGAAAATGGACGACTGTGCAGTCGTTTGCCTGTTCTTGGATGGGAAAATGGATTCAGAGTCAGAAAATGAAGAACAAGCTTCTTCTGCAACTCTTGAATCCAATCAAATGAGTAACACAGAATGTTCAGATGAAGAGCAGAGGTCTGGTGAGCCGAGTTTGCAAAGGAATTATACGGTTCGATCGTCGGAAGAAAAGGACCGAATTGGGGGGTTATATTCACATAGGGAAGAGAATGAAGAATCAATGTCTGCTGAAGATGAGAATTGGCTGGGACTGGAGGGTGTAACAAGAGTAAACTCTTTGGTTCAACTTCCTAGATTTTCTTGA 1446 44.33 MEMKKGFPIAVISKSPYLILCQSSCNGGSNGEGVFESCLGIGVCGRIERNRTFSDHVFSLQHLNSVPNRLVYNGKTSNSCIFTQQGRKGINQDAMVVWEDFISDGAIFCGVFDGHGPHGHVVARKVRDVLPRKLVSFWQSSQSKRDRSDRTSCLAWSRKNSADGEGQDIDGSQEDRSSYLWRRTFLKSYKAMDKELKSDPKLDCFCSGCTAITLVKQGSDLFVGSIGDSRAILGSKDSSDSLVATQLTVDLKPDLPREAERIKKCKGRVFALHDEPEVPRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHRVLTDNDLFVVLASDGVWDVLSNDEVVEIVYSALTRSLAARMVVDLAARQWKLKYPTSKMDDCAVVCLFLDGKMDSESENEEQASSATLESNQMSNTECSDEEQRSGEPSLQRNYTVRSSEEKDRIGGLYSHREENEESMSAEDENWLGLEGVTRVNSLVQLPRFS 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2692702 2695842 + CmaCh20G005550.1 Cma20g00555 316369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00555 481 CDD PP2Cc 84 385 IPR001932 -
Cma20g00555 481 SMART PP2C_4 67 383 IPR001932 -
Cma20g00555 481 Gene3D - 68 387 IPR036457 -
Cma20g00555 481 Pfam Protein phosphatase 2C 174 364 IPR001932 -
Cma20g00555 481 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 22 473 - -
Cma20g00555 481 MobiDBLite consensus disorder prediction 394 459 - -
Cma20g00555 481 MobiDBLite consensus disorder prediction 432 454 - -
Cma20g00555 481 MobiDBLite consensus disorder prediction 396 415 - -
Cma20g00555 481 ProSiteProfiles PPM-type phosphatase domain profile. 78 385 IPR001932 -
Cma20g00555 481 PANTHER ALPHABET, ISOFORM E-RELATED 22 473 - -
Cma20g00555 481 SUPERFAMILY PP2C-like 71 387 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01867 Cma-Chr11:12414538 Cma20g00555 Cma-Chr20:2692702 0 dispersed
Cma17g00593 Cma-Chr17:4918065 Cma20g00555 Cma-Chr20:2692702 1.78E-130 dispersed
Cma19g00978 Cma-Chr19:8542875 Cma20g00555 Cma-Chr20:2692702 0 dispersed
Cma20g00555 Cma-Chr20:2692702 Cma08g00078 Cma-Chr8:406155 4.17E-127 dispersed
Cma02g00117 Cma-Chr2:588445 Cma20g00555 Cma-Chr20:2692702 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00555 - - cmax:111469610 775.778