Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g00577 | ATGATTTCAAAAATGGCGGCCGATGGATCCAACCCTTCTCTTGGCAAGAAGAAAAGAAGCCTCCCCGGAACTCCAGATCCGGAAGCAGAGGTCATAGCCTTGTCGCCCAAGACACTGATGGCAACAAAGAGGTTCGTTTGTGAAATATGTGGAAAAGGGTTTCAAAGAGACCAAAATCTACAGCTGCATAGGCGAGGACATAACCTTCCATGGAAGCTGAAGCAACGAAGCAACAAAGAGGCAAAGAAGAGAGTGTATGTCTGCCCTGAGACAAGCTGCGTGCATCACCATCCATCGAGAGCGCTAGGAGACCTCACGGGGATAAAGAAGCACTTTTGTAGGAAGCATGGAGAGAAGAAGTGGAACTGCGAGAAATGCTCAAAGAGTTACGCGGTGCAATCGGATTGGAAAGCACATTCCAAAACTTGTGGCACTAGAGAATACAAATGTGACTGTGGCACTCTGTTTTCAAGGAGAGATAGCTTCATCACTCATAGGGCGTTCTGTGATGCATTGGCTGAAGAAGCTGCAAGAGTAAGCAATGCCATGGCGCAACATTGGGTGATGTACTGTGACCCTGTTTGCCAAAACCCACCACTGGGTGATTATTATAGTCACCAATTACAGGAAGTGAATCAAACCCATATGGGGACTATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGCCAATTTCAAGCTCCGGCCACTCGGTGATACTACAAGAGGGGTCTTTGTTTAATAATGGGAGTGAGTTTTGTAATGCTGGTACTACAAACCCAATTGGTGTTATTGAGAATGAGAATGAACTGTACACTGCAAAACGGCGTCGTACTCAGAGTGAAGTAGAGTGTGGAGCAACAGGAGCAGCAGGGCTGACAAGGGATTTTCTTGGAGTTAGTGCCCAAACTATTTGCCATTCCTCATCGACAATCAAGGGATGGATTTAG | 957 | 46.5 | MISKMAADGSNPSLGKKKRSLPGTPDPEAEVIALSPKTLMATKRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEAKKRVYVCPETSCVHHHPSRALGDLTGIKKHFCRKHGEKKWNCEKCSKSYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEEAARVSNAMAQHWVMYCDPVCQNPPLGDYYSHQLQEVNQTHMGTMSATALLQKAAEIGPISSSGHSVILQEGSLFNNGSEFCNAGTTNPIGVIENENELYTAKRRRTQSEVECGATGAAGLTRDFLGVSAQTICHSSSTIKGWI | 318 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 2758301 | 2759645 | - | CmaCh20G005770.1 | Cma20g00577 | 316391 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g00577 | 318 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 47 | 67 | IPR013087 | - | |
Cma20g00577 | 318 | SUPERFAMILY | beta-beta-alpha zinc fingers | 43 | 141 | IPR036236 | - | |
Cma20g00577 | 318 | SMART | c2h2final6 | 45 | 67 | IPR013087 | - | |
Cma20g00577 | 318 | SMART | c2h2final6 | 121 | 141 | IPR013087 | - | |
Cma20g00577 | 318 | PANTHER | ZINC FINGER PROTEIN MAGPIE | 214 | 311 | - | - | |
Cma20g00577 | 318 | PANTHER | ZINC FINGER PROTEIN MAGPIE | 12 | 186 | - | - | |
Cma20g00577 | 318 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 12 | 186 | - | - | |
Cma20g00577 | 318 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 214 | 311 | - | - | |
Cma20g00577 | 318 | Gene3D | Classic Zinc Finger | 98 | 179 | - | - | |
Cma20g00577 | 318 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cma20g00577 | 318 | Gene3D | Classic Zinc Finger | 23 | 97 | - | - | |
Cma20g00577 | 318 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 45 | 67 | IPR013087 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01799 | Cma20g00577 | CCT | |
Cma02g00198 | Cma20g00577 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma20g00577 | Cma-Chr20:2758301 | Cma03g00762 | Cma-Chr3:5974951 | 1.47E-109 | dispersed | |
Cma11g01799 | Cma-Chr11:12037177 | Cma20g00577 | Cma-Chr20:2758301 | 1.33E-08 | wgd | |
Cma02g00198 | Cma-Chr2:891185 | Cma20g00577 | Cma-Chr20:2758301 | 1.33E-155 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37012 | None | None | None | None | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g00577 | K25870 | - | cmax:111484111 | 667.922 |