Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00577 ATGATTTCAAAAATGGCGGCCGATGGATCCAACCCTTCTCTTGGCAAGAAGAAAAGAAGCCTCCCCGGAACTCCAGATCCGGAAGCAGAGGTCATAGCCTTGTCGCCCAAGACACTGATGGCAACAAAGAGGTTCGTTTGTGAAATATGTGGAAAAGGGTTTCAAAGAGACCAAAATCTACAGCTGCATAGGCGAGGACATAACCTTCCATGGAAGCTGAAGCAACGAAGCAACAAAGAGGCAAAGAAGAGAGTGTATGTCTGCCCTGAGACAAGCTGCGTGCATCACCATCCATCGAGAGCGCTAGGAGACCTCACGGGGATAAAGAAGCACTTTTGTAGGAAGCATGGAGAGAAGAAGTGGAACTGCGAGAAATGCTCAAAGAGTTACGCGGTGCAATCGGATTGGAAAGCACATTCCAAAACTTGTGGCACTAGAGAATACAAATGTGACTGTGGCACTCTGTTTTCAAGGAGAGATAGCTTCATCACTCATAGGGCGTTCTGTGATGCATTGGCTGAAGAAGCTGCAAGAGTAAGCAATGCCATGGCGCAACATTGGGTGATGTACTGTGACCCTGTTTGCCAAAACCCACCACTGGGTGATTATTATAGTCACCAATTACAGGAAGTGAATCAAACCCATATGGGGACTATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGCCAATTTCAAGCTCCGGCCACTCGGTGATACTACAAGAGGGGTCTTTGTTTAATAATGGGAGTGAGTTTTGTAATGCTGGTACTACAAACCCAATTGGTGTTATTGAGAATGAGAATGAACTGTACACTGCAAAACGGCGTCGTACTCAGAGTGAAGTAGAGTGTGGAGCAACAGGAGCAGCAGGGCTGACAAGGGATTTTCTTGGAGTTAGTGCCCAAACTATTTGCCATTCCTCATCGACAATCAAGGGATGGATTTAG 957 46.5 MISKMAADGSNPSLGKKKRSLPGTPDPEAEVIALSPKTLMATKRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEAKKRVYVCPETSCVHHHPSRALGDLTGIKKHFCRKHGEKKWNCEKCSKSYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEEAARVSNAMAQHWVMYCDPVCQNPPLGDYYSHQLQEVNQTHMGTMSATALLQKAAEIGPISSSGHSVILQEGSLFNNGSEFCNAGTTNPIGVIENENELYTAKRRRTQSEVECGATGAAGLTRDFLGVSAQTICHSSSTIKGWI 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2758301 2759645 - CmaCh20G005770.1 Cma20g00577 316391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00577 318 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Cma20g00577 318 SUPERFAMILY beta-beta-alpha zinc fingers 43 141 IPR036236 -
Cma20g00577 318 SMART c2h2final6 45 67 IPR013087 -
Cma20g00577 318 SMART c2h2final6 121 141 IPR013087 -
Cma20g00577 318 PANTHER ZINC FINGER PROTEIN MAGPIE 214 311 - -
Cma20g00577 318 PANTHER ZINC FINGER PROTEIN MAGPIE 12 186 - -
Cma20g00577 318 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 186 - -
Cma20g00577 318 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 214 311 - -
Cma20g00577 318 Gene3D Classic Zinc Finger 98 179 - -
Cma20g00577 318 MobiDBLite consensus disorder prediction 1 28 - -
Cma20g00577 318 Gene3D Classic Zinc Finger 23 97 - -
Cma20g00577 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 67 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01799 Cma20g00577 CCT
Cma02g00198 Cma20g00577 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00577 Cma-Chr20:2758301 Cma03g00762 Cma-Chr3:5974951 1.47E-109 dispersed
Cma11g01799 Cma-Chr11:12037177 Cma20g00577 Cma-Chr20:2758301 1.33E-08 wgd
Cma02g00198 Cma-Chr2:891185 Cma20g00577 Cma-Chr20:2758301 1.33E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37012 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00577 K25870 - cmax:111484111 667.922