Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00581 ATGCCGAAGGGTTTGAAGAGTAAATGTCATTCTACTTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTTAATGATCTTCAAGGGATATTCACTAATCTTCAAAATGCACGAAAGGAGAGTCGTACTACTGATATTGCTGTCTTGGAGGAGCAAGTCCATCAAATGCTTAGGGAGTGGAATGCTGAGCTTAATGAACCATCGCCTTCCTCTTCATTTGTTGAGGGTAGTCTTGGATCGTTCTCGCAAGAACTAGCCCGTCTTCTTGAGCATTGTGATGAGCAAGATGATGCAACTAGTACAATGGCTGAACCAAAGACTGAACCTGAACTCCATTGCGTTCTTGCCAGCAAACCGTCAAATTTTGTTCAGGATAGTTTTGGTTTTCCGGAGCTCCAACAGCATAGTTTTCTAGGATTTGAAGAGTGCCAAGTCTCTTCTCCAGTTCTACAGAATTATTCATTTTACAAATCTGACATGGCTACTCAGCCTAATTGTCAAAGTTTCGAAGTAGATAAAAACTTTGAGCAGAACACGGTAGTCAGTAAGGATGATGTGTCTACTTTGGATTGCATTGCATTGAATTCACATCAAGAATTCGACTATGGGGTTCTTGTTGGGCCATATGATGCGGGAGACTTTAGTCAGGACACAAAGTCCGGTATTCTCCCAACTATCTCACCCCCACCGTCTGCTTTTATGGGCCCGATATGTGCTCTCTGGGATTGTTTCAGACCTGCTCAAGGATCCAAATGGTGCCTGGACTATTGCAGTAGTTGTCATTCTGTTCTTGCAATAAATGAAGGCCTTCCAGGAATGACTCCAATATTGCGCCCTGGAGGCATTGGCTTAAAGGATGGTCCATTGTTTGCTGCTCTTCGTGCAAAGACACGGACCAAAGAAGTTGGAATACCCATATGTGATGGTGCTGCAACAAGGAAATCCCCATGGAATGCTCCTGAGCTTTTTGATATTTCATTTCTTGAGGGGGAGACAATCAGGGAATGGCTCTACTTCGACAAGCCTAGACGGGCCTTTGAGAGTGGCAATCGAAAGCAAAGGTCATTGCCAGATTATAATGGGCGTGGTTGGCATGAATCAAGGAAGCAGGTGATGAAGGAGTTCGGTGGTCAGAAGAAGTCTTATTACATGGATCCACAGCCATCAAGCTCTCTTGAATGGCATTTGTACGAATACGATATCACAGATTATGATTCATTCGCATTATATAGGCTGGAACTCAAGCATGCTGATGCAAAGAAGAGCCCAAAGGGAAAACTGACAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGGCCTGTTGAGCTTGGACAACTTATTAAAGCTAAGAGTACGAGTACGACGATTGCGAATAATAAGGCTGATAATGTAAGTATCAATCTTTCTCCACATCATCAGAATATGTCTAACACTAACTGA 1464 43.58 MPKGLKSKCHSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDIAVLEEQVHQMLREWNAELNEPSPSSSFVEGSLGSFSQELARLLEHCDEQDDATSTMAEPKTEPELHCVLASKPSNFVQDSFGFPELQQHSFLGFEECQVSSPVLQNYSFYKSDMATQPNCQSFEVDKNFEQNTVVSKDDVSTLDCIALNSHQEFDYGVLVGPYDAGDFSQDTKSGILPTISPPPSAFMGPICALWDCFRPAQGSKWCLDYCSSCHSVLAINEGLPGMTPILRPGGIGLKDGPLFAALRAKTRTKEVGIPICDGAATRKSPWNAPELFDISFLEGETIREWLYFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKEFGGQKKSYYMDPQPSSSLEWHLYEYDITDYDSFALYRLELKHADAKKSPKGKLTADPLADLQKKMGRLTAEGPVELGQLIKAKSTSTTIANNKADNVSINLSPHHQNMSNTN 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2770379 2773385 + CmaCh20G005810.1 Cma20g00581 316395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00581 487 Coils Coil 18 38 - -
Cma20g00581 487 PANTHER TRANSCRIPTION FACTOR VOZ1 1 462 IPR039277 GO:0006355|GO:0048578
Cma20g00581 487 PANTHER TRANSCRIPTION FACTOR VOZ2 1 462 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00196 Cma20g00581 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01301 Cma-Chr3:8431013 Cma20g00581 Cma-Chr20:2770379 7.44E-130 dispersed
Cma07g00212 Cma-Chr7:978085 Cma20g00581 Cma-Chr20:2770379 6.41E-174 dispersed
Cma02g00196 Cma-Chr2:876295 Cma20g00581 Cma-Chr20:2770379 0 wgd
Cma20g00581 Cma-Chr20:2770379 Cma03g01300 Cma-Chr3:8428355 5.48E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37013 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00581 - - csv:101211467 834.713