Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00588 ATGCCAAATTTGCCTCCCAAATTCCCAAACTTCAACACTCCAAATCCCCCTGCACACGACGACTTCCTTTCCTTCTCGTCCCCTCGACAAAGTCTCCACCATCGGTCTGTTAGCGACTCGATCGCCTTCCTCAAAACGCCGACGATGAATCAAAGCATTTTAGGCTCGGCTGCACCATCCAACAATAATGCATTTGATGGGTTTGATGAAGATGATCAGCCAACTTCTTCCGAGACACATAACGATGGAAACACTGACTCGAAACGAGTCAAGAGAATCTTAGCAAACAGACAATCTGCACGAAGATCACGGGTGAGAAAGCTGCAATATATTACAGAACTGGAACAAAGTATCAGTACATTACAGGCCGAAGTTTCAATGTTGTCACCACGAGTAGCATTTCTAGATCAACAACGACTGCTTCTAAACGTGGACAATAGTGCTTTGAAGCAAAGAATCGCCTCCCTCTCCCAAGACAACATTTTCAAAGATGCCCATGAAGAAGCATTGAAGAGGGAAATAGAGAGATTAGGGCAATTATACCATCGGCAACAGAAGAATCGGAGAATGGATAGCAATGGGCCGTCGCCGGCAGCAACCAACGAACCCATATCTCCGGGAGATAAAAACCAGAAGCTTCTCTATGTTTGA 651 45.47 MPNLPPKFPNFNTPNPPAHDDFLSFSSPRQSLHHRSVSDSIAFLKTPTMNQSILGSAAPSNNNAFDGFDEDDQPTSSETHNDGNTDSKRVKRILANRQSARRSRVRKLQYITELEQSISTLQAEVSMLSPRVAFLDQQRLLLNVDNSALKQRIASLSQDNIFKDAHEEALKREIERLGQLYHRQQKNRRMDSNGPSPAATNEPISPGDKNQKLLYV 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2783690 2785148 + CmaCh20G005880.1 Cma20g00588 316402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00588 216 MobiDBLite consensus disorder prediction 1 30 - -
Cma20g00588 216 SMART brlzneu 84 148 IPR004827 GO:0003700|GO:0006355
Cma20g00588 216 MobiDBLite consensus disorder prediction 53 87 - -
Cma20g00588 216 SUPERFAMILY Leucine zipper domain 88 142 IPR046347 GO:0003700|GO:0006355
Cma20g00588 216 MobiDBLite consensus disorder prediction 73 87 - -
Cma20g00588 216 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 91 106 IPR004827 GO:0003700|GO:0006355
Cma20g00588 216 MobiDBLite consensus disorder prediction 184 216 - -
Cma20g00588 216 PANTHER BASIC LEUCINE ZIPPER 34 14 76 - -
Cma20g00588 216 PANTHER BASIC LEUCINE ZIPPER 34 72 197 - -
Cma20g00588 216 MobiDBLite consensus disorder prediction 53 70 - -
Cma20g00588 216 Coils Coil 167 187 - -
Cma20g00588 216 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 86 138 IPR004827 GO:0003700|GO:0006355
Cma20g00588 216 PANTHER BASIC LEUCINE ZIPPER 34 14 76 - -
Cma20g00588 216 PANTHER BASIC LEUCINE ZIPPER 34 72 197 - -
Cma20g00588 216 Gene3D - 87 160 - -
Cma20g00588 216 CDD bZIP_plant_RF2 89 139 IPR044759 GO:0003700|GO:0006355
Cma20g00588 216 MobiDBLite consensus disorder prediction 190 207 - -
Cma20g00588 216 Pfam bZIP transcription factor 87 135 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01804 Cma20g00588 CCT
Cma11g01804 Cma20g00588 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00588 Cma-Chr20:2783690 Cma16g00389 Cma-Chr16:1901032 2.86E-20 dispersed
Cma11g01804 Cma-Chr11:12068222 Cma20g00588 Cma-Chr20:2783690 3.24E-54 wgd
Cma19g00903 Cma-Chr19:8200732 Cma20g00588 Cma-Chr20:2783690 5.81E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37014 PF00170 bZIP_1 7.20E-10 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00588 - - csv:105434687 265.003