Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00605 ATGGACTGGACTAGACGCCACGTCATCGGACACGGCTCCTCCGCCACCGTCTTCCTTGCCACGGATTCTCCCTCCGGCGACGTTTTCGCCGTCAAATCCGCTGAGATTTCACACTCGCAATCTCTACAAACTGAGCAACAGTTTCTTTCTTCTTTAGCCTCTCCGTACGTAGTTTCTTATAAAGGGTATGAGGTCCGTAGAGAACAGAGTGGGGTCGTGATGTTCAATCTTTTCATGGAGTATTTGCCCAACGGTTCGCTTGCCGACGTAATTCGCCGCCGTGGAGGACGGCGGCTCGACGAGGCGGCAATCGGAATTTACACGCGGCAGTTACTACAAGGCCTACAGTACATTCATTCCAAAGGCTTGGTGCATTGCGACATTAAATCCCGAAACGTTTTGATCGGTCGAGACGGTGAGGCTAAATTGGCCGATTTCGGATGCGCCAAGTGGGCGAGCCAAACAGACTCAATTGGTGGCACGCCGCTGTTTATGGCACCAGAAGTGGCTCGTGGGGAGCACCAAGGGCTACCCTCTGACATTTGGTCCATTGGGTGTTCGGTCATCGAAATGGCCACCGGCGGCGGCTCACCTTGGCCGAAAACAACCAGCGACTCCGACCCAATTTCCGCTCTGTACCGAATTGGGTATTCCGGCGAGTCGCCGGAAATTCCATCCTTTTTATCCCACAAAGCAAAGGATTTTCTAGAGAAATGCTTAAGAATGAATCCAAATGAGAGATGGACAGCCAATCAGCTTCTAAATCACCCATTTGTGAGGGAATTCAATTCCTCCCCAAAGAAAATCCATGAAGTTCATTCGAATTCTCCAACGAGTATTCTAGAACAGGGCGTTTGGAGATCCATTGAAGAAAGTGAAATCAGAGAAGCCAAATCGTGTAGACCCAATAGTTGGGCAGCAGAGCAGATCCGACGGCTGTGGATGGCCTCAGGAGAGCCGAGCTGGAGAGATGATGAGACCTGGATTACAATTCGAAGACAGGACATTGGAAAAAGCAAAGAAGTCGGTGACGAAGGCGACACGATTGGTGGGTCAGAAGTGAAAGGCTGTAGTAATAATTGTTGGGGTGAGAAACAGAGAGGCGGTGGCGGCAAGGAGTGGTCTGAAACGGAATTCACACAGAATAACGGTGGTTTTAGCTGCAGAATTAGTAGGAATGATTTGGCAGACCATCGTTGTGCCCTTAAATTCATTAATTCATTGTGGGTATTGTCCTAG 1239 49.8 MDWTRRHVIGHGSSATVFLATDSPSGDVFAVKSAEISHSQSLQTEQQFLSSLASPYVVSYKGYEVRREQSGVVMFNLFMEYLPNGSLADVIRRRGGRRLDEAAIGIYTRQLLQGLQYIHSKGLVHCDIKSRNVLIGRDGEAKLADFGCAKWASQTDSIGGTPLFMAPEVARGEHQGLPSDIWSIGCSVIEMATGGGSPWPKTTSDSDPISALYRIGYSGESPEIPSFLSHKAKDFLEKCLRMNPNERWTANQLLNHPFVREFNSSPKKIHEVHSNSPTSILEQGVWRSIEESEIREAKSCRPNSWAAEQIRRLWMASGEPSWRDDETWITIRRQDIGKSKEVGDEGDTIGGSEVKGCSNNCWGEKQRGGGGKEWSETEFTQNNGGFSCRISRNDLADHRCALKFINSLWVLS 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2831848 2834561 + CmaCh20G006050.1 Cma20g00605 316419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00605 412 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cma20g00605 412 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 346 - -
Cma20g00605 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Cma20g00605 412 ProSiteProfiles Protein kinase domain profile. 3 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00605 412 CDD STKc_MAPKKK 2 259 - -
Cma20g00605 412 Pfam Protein kinase domain 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00605 412 PRINTS Tyrosine kinase catalytic domain signature 117 135 IPR001245 GO:0004672|GO:0006468
Cma20g00605 412 PRINTS Tyrosine kinase catalytic domain signature 179 201 IPR001245 GO:0004672|GO:0006468
Cma20g00605 412 PRINTS Tyrosine kinase catalytic domain signature 79 92 IPR001245 GO:0004672|GO:0006468
Cma20g00605 412 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 346 - -
Cma20g00605 412 SUPERFAMILY Protein kinase-like (PK-like) 2 307 IPR011009 -
Cma20g00605 412 SMART serkin_6 3 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00605 412 Gene3D Transferase(Phosphotransferase) domain 1 2 320 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma19g00913 Cma20g00605 CCT
Cma11g01815 Cma20g00605 CCT
Cma19g00913 Cma20g00605 ECH
Cma11g01815 Cma20g00605 ECH
Cma02g00175 Cma20g00605 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00987 Cma-Chr20:5356228 Cma20g00605 Cma-Chr20:2831848 3.19E-62 dispersed
Cma01g01118 Cma-Chr1:8194586 Cma20g00605 Cma-Chr20:2831848 1.15E-93 wgd
Cma11g01815 Cma-Chr11:12131750 Cma20g00605 Cma-Chr20:2831848 2.83E-134 wgd
Cma19g00913 Cma-Chr19:8240449 Cma20g00605 Cma-Chr20:2831848 5.61E-126 wgd
Cma02g00175 Cma-Chr2:804772 Cma20g00605 Cma-Chr20:2831848 0 wgd
Cma20g00605 Cma-Chr20:2831848 Cma03g00547 Cma-Chr3:5098993 8.28E-89 wgd
Cma20g00605 Cma-Chr20:2831848 Cma07g00322 Cma-Chr7:1405439 4.96E-102 wgd
Cma20g00605 Cma-Chr20:2831848 Cma09g00962 Cma-Chr9:4863606 7.62E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69392 PF00069 Pkinase 5.10E-56 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00605 K20716 - csv:101208274 600.897