Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00622 ATGGAGAGCCTATTAGTTCTTACATTGATTAGTTCGATATGGGTATTTCTTGCTGGTTCTGCATGTTGCCAAAGGCCCGCGGTTGTGAATATTGGTGCAGTTTTCACTTTTGATTCCATTATAGGAAGAGCGGCGAAGGTGGCAATGGAAGCTGCAGTTTCGGATGTGAATGCAGATCCTTCCATTCTCAATGGAACAAGGCTAAATTTGATCATGGCAGATACACATTGCAATGTTCTCTTGGGTTCAATTCGAGCTTTCCAGGTTCTTGAGAAAGACGTAGTAGCCATAGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTCTACAGATTGCTAATCATCTCCAAGTGCCACTTATATCATACGCTGCCACTGATCCAACTTTATCTGCCCTCCAATTCCCCTTTTTCCTACGGACTACTCAGAGTGATGCCTATCAAATGACTGCTATGGCAGAATTAATTGACTTTTATGAGTGGAAGGAAGTGATCATTATCTTTGTGGATGATGATTATGGTAGAAATGGAATGTCCACTTTAACTGATGAACTTGACAAGAAGATGTTTAAAGTTTCTTACAAACTACCCTTACCTTCTCAGTTGAATCTCAGTGAAATCACAGACATTCTCAATAAATCCAAGTTGCTCGGTCCTCGAGTCTATGTTGTTCATGTTAATCCTGATCCTAGATTAAGCATCTTCAAAATAGCCCATCAACTTGATATGATGACAAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTTCTACCTTAGATTCTATTCTGCCCGCACACCAAACCTCTCTAAACATCCTTCAAGGAGTGGTTGTACTTCGTCAATATACGCCTGAATCCAGCCAAAAAACAACATTATGGTCTCGTTTAAGGAAGATGCTGCCAGAAGACTCGAGAAATTCTTCGATGAATGTCCATGCTCTTAGTGCCTACGATACCATTCAAGTAGTTGCACGTGCGATTGGTAAGTTTCTAAATGGAGGCAGGAGCCTTACCTTCTCATTAAAGAACAAGTTTCATGATTTAAATACATCTAGAATGCCGTGGGGGAAGCTCAAAATATTTGATGATGGCTTTACTATCCAATCCCCAGAAGCGCTGAAACAGAAACGAATTACTTATACCCACCTGAACCAGACTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAGACCGCGTGGATGGGTGATTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACGCAGAGTAAGTTTCATTGAATTTGTTTCAGCAGTCAATGGAAGCCACAAAAACATTCAAGGATACTGTATCGATCTGTTCAATGAAGCAAGAAAGCTGGTTCCCTACGATGTTCCTTACAGATTTATACCTTTTGGAAATGGCTACTCCAATCCTAGCTATGATGATCTTGTGAAGAACATTGCAAATGGTATATTTGATGCAGCTGTTGGAGATATTGCAATTGTAACCAATCGCACAAAGGTCGTGGATTTTTCTCAGCCTTTTGCTTCTACTGGTCTTGTTATTGTGGCTCCAATAACAAATTCAAAGTCGAATGCTTGGGTGTTCCTCAAACCATTTACAGTCGAGATGTGGTGTGTTACGTCGGCCTCCTTCTTCATGATTGGAGCAGTCATATGGCTTCTCGAGCACCGAGTAAATGATGATTTCCGTGGTCCACCAAAGAGGCAGCTAGTGACAGTTATTCTGTTCAGCTTCTCAACATTGTTCAAAACAAATCAGGAAGTTACAATAAGTCCACTTGGACGTATGGTAATGGTGATGTGGCTTTTCTTATTGATGGTTATCACGTCAAGCTACACAGCCAGTCTCACTTCAATCCTTACAGTACAGCAGCTTTCATCTCCCATTAAAGGACTTGAGGACTTGATTACTAAGGAACAGCCAATTGGGTACCAGGTAGGATCGTTCGCGTTTAGCTATCTAACCGAGAGTCTTTACCTTCCACAATCAAGGCTCGTACCCCTAGGTTCTCCAGAAGAATATGAATCAGCATTGCTTAAGGGGCCATTCAAGAAAGGAGGGGTGGCGGCCATTGTCGATGAACTTCCATATATGGAACTATTCTTATCAGGGAGGAACGATTTCGGAATTATCGGACAACCGTTCACCAAGAGTGGATGGGGATTTGCTTTTCAGAGAGGATCTCCACTTGCGGTAGACATTTCAACTGCAATTCTAAAGCTTTCTGAGAATGGAAAGCTTCAGAAGATCCATGAGAAGTGGTTCTGCAAGATGGGTTGTCCTGGAGAGAGGAGAAGGAAATCTGAGCCTAACCAACTTCACTTGGTTAGCTTCTGGGGTCTATATCTGCTGTGCGGTGCCTTCTCACTCGTGTGTCTTTTTATATTTTTGTTTCGCATAGTTCGACAATTCGCTCGCTACATACGACAACAGAAGGAATCGTCTCATGCAGAATTGGTGTCATCAAATTCAAACTCGAACTGGACTCAGGTTGTATACAAGTTTATCGACTTTGTTGATGAGAAGGAAGAAGCCATCAAGAGACTTTTTTCGAAAGCATGA 2562 42.08 MESLLVLTLISSIWVFLAGSACCQRPAVVNIGAVFTFDSIIGRAAKVAMEAAVSDVNADPSILNGTRLNLIMADTHCNVLLGSIRAFQVLEKDVVAIVGPQSSVVAHMVLQIANHLQVPLISYAATDPTLSALQFPFFLRTTQSDAYQMTAMAELIDFYEWKEVIIIFVDDDYGRNGMSTLTDELDKKMFKVSYKLPLPSQLNLSEITDILNKSKLLGPRVYVVHVNPDPRLSIFKIAHQLDMMTSDYVWLATDWLSSTLDSILPAHQTSLNILQGVVVLRQYTPESSQKTTLWSRLRKMLPEDSRNSSMNVHALSAYDTIQVVARAIGKFLNGGRSLTFSLKNKFHDLNTSRMPWGKLKIFDDGFTIQSPEALKQKRITYTHLNQTLGNVTWPGGKTERPRGWVIADNERPLIIGVPRRVSFIEFVSAVNGSHKNIQGYCIDLFNEARKLVPYDVPYRFIPFGNGYSNPSYDDLVKNIANGIFDAAVGDIAIVTNRTKVVDFSQPFASTGLVIVAPITNSKSNAWVFLKPFTVEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVILFSFSTLFKTNQEVTISPLGRMVMVMWLFLLMVITSSYTASLTSILTVQQLSSPIKGLEDLITKEQPIGYQVGSFAFSYLTESLYLPQSRLVPLGSPEEYESALLKGPFKKGGVAAIVDELPYMELFLSGRNDFGIIGQPFTKSGWGFAFQRGSPLAVDISTAILKLSENGKLQKIHEKWFCKMGCPGERRRKSEPNQLHLVSFWGLYLLCGAFSLVCLFIFLFRIVRQFARYIRQQKESSHAELVSSNSNSNWTQVVYKFIDFVDEKEEAIKRLFSKA 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2895161 2908192 + CmaCh20G006220.1 Cma20g00622 316436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00622 853 Gene3D - 525 659 - -
Cma20g00622 853 Gene3D - 47 369 - -
Cma20g00622 853 PANTHER GLUTAMATE RECEPTOR 3.7 365 849 - -
Cma20g00622 853 Pfam Receptor family ligand binding region 46 342 IPR001828 -
Cma20g00622 853 Gene3D - 144 309 - -
Cma20g00622 853 Gene3D - 705 762 - -
Cma20g00622 853 CDD GluR_Plant 411 755 - -
Cma20g00622 853 PIRSF IGluLR_plant 361 852 IPR017103 -
Cma20g00622 853 PIRSF IGluLR_plant 1 368 IPR017103 -
Cma20g00622 853 SUPERFAMILY Periplasmic binding protein-like II 388 755 - -
Cma20g00622 853 SUPERFAMILY Periplasmic binding protein-like I 22 404 IPR028082 -
Cma20g00622 853 Pfam Bacterial extracellular solute-binding proteins, family 3 434 755 IPR001638 -
Cma20g00622 853 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 365 849 - -
Cma20g00622 853 Pfam Ligand-gated ion channel 756 786 IPR001320 GO:0015276|GO:0016020
Cma20g00622 853 SMART GluR_14 414 757 IPR001320 GO:0015276|GO:0016020
Cma20g00622 853 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 364 - -
Cma20g00622 853 Gene3D - 421 524 - -
Cma20g00622 853 PANTHER GLUTAMATE RECEPTOR 3.7 11 364 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00167 Cma20g00622 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00622 Cma-Chr20:2895161 Cma09g00038 Cma-Chr9:166741 0 dispersed
Cma20g00622 Cma-Chr20:2895161 Cma20g00624 Cma-Chr20:2914311 0 proximal
Cma11g01829 Cma-Chr11:12217237 Cma20g00622 Cma-Chr20:2895161 0 wgd
Cma02g00167 Cma-Chr2:772351 Cma20g00622 Cma-Chr20:2895161 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00622 K05387 - csv:101215715 1537.7