Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g00624 | ATGAAGGTGTTTTGGATTAGGAGTGGCCATTGGGTCAGAACCATAGCTTTGATCTTTGCATTGTTCTTTGAGATATGGATGCCTTTGGGAGTGATTGGTATTGGTGTCTCTCAAAACACAAACGTTTCTTCTTTGAATCCGAGGGTGTTGAAAGTTGGAGTTCTGTTCACTCTTGATTCAGTCATTGGAAGGTCGGCACAGCCTGCGATTTTAGCTGCCGTGGACGATGTCAATGCCGATAACAGTGTTCTTCCTGGAACAAAGCTGAAGTTGATCTTACACGACACGAACTGCAGTGGATTTCTTGGAACAGTGGAAGCCATGCAGATGATGGAAGATGAAGTAGTTGCTGCTATTGGGCCACAATCTTCAGGCATTGCTCATGTCATTTCCCATGTTATTAATGAACTCCATATACCTCTTCTATCATTTGGAGCTACTGATCCCACTTTATCTGCACTGCAATACCCGTATTTCGTTCGGACGACTCAGAGTGATCACTTCCAGATGAACGCCATTGCTGATATGGTAGATTATTTTGGATGGAGAGAGGTCATTGCCATCTTTGTAGATGATGATAATGGCAGGAGCGGGATATCGGCATTGAGTGACGCCTTGGCAAAGAAACGAGCCAGGATCTCTTATAAGGCTGCTTTCTCTCCTGGATCCCCCAATAGCGTAATAAGTGAATTGTTGGTTTCGATAAACCTGATGGAATCTCGGGTGTATATCGTACATGTCAATCCCGACACTGGTTTATCAGTATTTTCATTAGCTAAGAAACTTCAGATGATGAGCAGTGGCTATGTCTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATATTCCTGATATCATGAATCAGTTACAGGGCGTTGTAGCTCTTCGTCACCACACCCCGGACAGCGATCTGAAGAAAATTTTTGTCTCTAAATGGAAAGGACTAAAGTATAAGAAGAGTTCAAGCTTCAACTCTTATGCACTCTACGCATACGACTCTGTTTGGTTAGCAGCCCGTGCTCTCGACACGTTTCTTAAAGAAGGTGGACATATATACTTTTCTACTGACCCCAAGCTACGTGAAAACAATGGAAGCATACTGCACTTAAAATCACTTCGAGTTTTTAATGGCGGCGAACAACTCTTACAGACAATCAAGAGAACGAACTTCACCGGTGTAAGTGGACGAATTCAGTTTGGTGATGACAGAAATTTGATTCATCCAGCTTATGATATCCTTAACATTGGGGGTACTGGTATACGTAGAATCGGTTACTGGTCGAATTATTCGGGTTTATCAACTATTGCACCAGAGAATCTGTATACAAAGCCTCTTAATGCTTCCCGAAATAACCATCTATACAGTGTAATATGGCCGGGTGAAGTAACGAGCGTTCCTCGAGGATGGGTGTTCCCGCATAACGGGAAACCATTGCAAATTGTAGTACCTAACCGTGTGAGCTACAAAGCATTTGTATCTAAAGACAAGAACCCTCCAGGGGTTAAAGGGTATTGTATAGATGTCTTTGAAGCTGCCTTAAACTTGTTGCCTTATCCAGTTCCTCGCACATATATATTATATGGAGATGGAAAAGACACTCCTGAGTACAGCAATCTTGTATATGAAGTTTCACAGAATAAATATGATGCAGCTGTTGGAGATATTACGATTGTAACAAATAGGACGAAGATTGTGGACTTCACACAGCCATTTATGGAGTCGGGACTCGTTGTCGTTACTGTCGTCAACGAGGAGAAATCCAGTCCGTGGGCTTTCCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCCATATTCTTCATTTTTGTTGGAGCTGTTGTCTGGATTCTTGAGCACCGGACCAATGAAGAATTCCGTGGTCCGCCAAGGCAACAACTCATTACAATCTTCTGGTTTAGTTTCTCGACAATGTTCTTTTCTCACAAGGAAAACACCGTAAGCACCCTCGGACGGCTGGTGCTGATAATATGGCTCTTCGTCGTGTTAATTATCAATTCGAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTGCAGCAGCTAACATCAAAGATCGAAGGGATTGATAGCTTAATCTCTGGCACAGATGCCATTGGAGTGCAAGAAGGGTCATTTGCATTGAATTATCTAATTAATGAGCTGAGTATAGCAGCTTCTAGGATCATTAAACTGAAAAATCAGGAGGAATATGCCGATGCTCTTCGGCGTGGACCAGGGAATGGCGGGGTAGCTGCCATCGTTGATGAGCTTCCTTACGTCGAGCTTTTCTTGGCCGGGACGAACTGCATATTCAGGACAGTTGGACAGGAGTTCACCAAAAGTGGATGGGGATTTGCATTCCAAAGAGACTCTCCTCTTGCAGTTGATTTATCAACAGCCATTCTTCAACTCTCGGAGAACGGCGATCTTCAAAAGATCCACGACAAATGGCTGTCACGAACCGAGTGTTCAATGAGCTTGAACCAAGTNGACGTAAACCAACTATCACTAAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGTATTGCCTGCTTTATTGCTCTTTCCATATTCTTCTTTCGAGTACTATTCCAATACCGAAGATTTACCCCCGAAACCCAGCCTGAAGTCGAGGATATCGAACCTGTCAGGACGAGACGCCTTAGTCGTACTACCAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAATCAAAGGCAAGCTTAAAAGAAAAGTCAGTGAGAACAAACAAGCTAGCCAGAGCTCAGAGGCCCACCTTGATTCACCACCTTGA | 2817 | 43.41 | MKVFWIRSGHWVRTIALIFALFFEIWMPLGVIGIGVSQNTNVSSLNPRVLKVGVLFTLDSVIGRSAQPAILAAVDDVNADNSVLPGTKLKLILHDTNCSGFLGTVEAMQMMEDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPTLSALQYPYFVRTTQSDHFQMNAIADMVDYFGWREVIAIFVDDDNGRSGISALSDALAKKRARISYKAAFSPGSPNSVISELLVSINLMESRVYIVHVNPDTGLSVFSLAKKLQMMSSGYVWIATDWLPSFLDSFETNIPDIMNQLQGVVALRHHTPDSDLKKIFVSKWKGLKYKKSSSFNSYALYAYDSVWLAARALDTFLKEGGHIYFSTDPKLRENNGSILHLKSLRVFNGGEQLLQTIKRTNFTGVSGRIQFGDDRNLIHPAYDILNIGGTGIRRIGYWSNYSGLSTIAPENLYTKPLNASRNNHLYSVIWPGEVTSVPRGWVFPHNGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAALNLLPYPVPRTYILYGDGKDTPEYSNLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVNEEKSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISGTDAIGVQEGSFALNYLINELSIAASRIIKLKNQEEYADALRRGPGNGGVAAIVDELPYVELFLAGTNCIFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDVNQLSLSSFWGLFLICGIACFIALSIFFFRVLFQYRRFTPETQPEVEDIEPVRTRRLSRTTSFMHFVDKKEAEIKGKLKRKVSENKQASQSSEAHLDSPP | 938 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 2914311 | 2919893 | + | CmaCh20G006240.1 | Cma20g00624 | 316438 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g00624 | 938 | Pfam | Ligand-gated ion channel | 827 | 858 | IPR001320 | GO:0015276|GO:0016020 | |
Cma20g00624 | 938 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 494 | 826 | IPR001638 | - | |
Cma20g00624 | 938 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 63 | 79 | - | - | |
Cma20g00624 | 938 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 123 | 151 | - | - | |
Cma20g00624 | 938 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 336 | 348 | - | - | |
Cma20g00624 | 938 | Gene3D | - | 478 | 593 | - | - | |
Cma20g00624 | 938 | Gene3D | - | 594 | 734 | - | - | |
Cma20g00624 | 938 | PANTHER | GLUTAMATE RECEPTOR 3.4 | 35 | 920 | - | - | |
Cma20g00624 | 938 | SUPERFAMILY | Periplasmic binding protein-like II | 459 | 826 | - | - | |
Cma20g00624 | 938 | Gene3D | - | 165 | 438 | - | - | |
Cma20g00624 | 938 | Gene3D | - | 778 | 832 | - | - | |
Cma20g00624 | 938 | SUPERFAMILY | Periplasmic binding protein-like I | 46 | 476 | IPR028082 | - | |
Cma20g00624 | 938 | CDD | PBP1_GABAb_receptor_plant | 51 | 439 | IPR044440 | - | |
Cma20g00624 | 938 | PIRSF | IGluLR_plant | 14 | 937 | IPR017103 | - | |
Cma20g00624 | 938 | Pfam | Receptor family ligand binding region | 67 | 422 | IPR001828 | - | |
Cma20g00624 | 938 | CDD | GluR_Plant | 482 | 825 | - | - | |
Cma20g00624 | 938 | MobiDBLite | consensus disorder prediction | 915 | 938 | - | - | |
Cma20g00624 | 938 | Gene3D | - | 69 | 413 | - | - | |
Cma20g00624 | 938 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 35 | 920 | - | - | |
Cma20g00624 | 938 | SMART | GluR_14 | 485 | 827 | IPR001320 | GO:0015276|GO:0016020 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01829 | Cma20g00624 | CCT | |
Cma02g00166 | Cma20g00624 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g02028 | Cma-Chr1:12944004 | Cma20g00624 | Cma-Chr20:2914311 | 0 | dispersed | |
Cma07g00382 | Cma-Chr7:1636511 | Cma20g00624 | Cma-Chr20:2914311 | 0 | dispersed | |
Cma09g00038 | Cma-Chr9:166741 | Cma20g00624 | Cma-Chr20:2914311 | 0 | dispersed | |
Cma11g01329 | Cma-Chr11:8810190 | Cma20g00624 | Cma-Chr20:2914311 | 0 | dispersed | |
Cma11g01829 | Cma-Chr11:12217237 | Cma20g00624 | Cma-Chr20:2914311 | 0 | dispersed | |
Cma12g00660 | Cma-Chr12:3530829 | Cma20g00624 | Cma-Chr20:2914311 | 4.46E-173 | dispersed | |
Cma12g00665 | Cma-Chr12:3569926 | Cma20g00624 | Cma-Chr20:2914311 | 3.99E-158 | dispersed | |
Cma19g00801 | Cma-Chr19:7732635 | Cma20g00624 | Cma-Chr20:2914311 | 0 | dispersed | |
Cma20g00622 | Cma-Chr20:2895161 | Cma20g00624 | Cma-Chr20:2914311 | 0 | proximal | |
Cma02g00166 | Cma-Chr2:764297 | Cma20g00624 | Cma-Chr20:2914311 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g00624 | K05387 | - | csv:101215485 | 1680.61 |