Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00624 ATGAAGGTGTTTTGGATTAGGAGTGGCCATTGGGTCAGAACCATAGCTTTGATCTTTGCATTGTTCTTTGAGATATGGATGCCTTTGGGAGTGATTGGTATTGGTGTCTCTCAAAACACAAACGTTTCTTCTTTGAATCCGAGGGTGTTGAAAGTTGGAGTTCTGTTCACTCTTGATTCAGTCATTGGAAGGTCGGCACAGCCTGCGATTTTAGCTGCCGTGGACGATGTCAATGCCGATAACAGTGTTCTTCCTGGAACAAAGCTGAAGTTGATCTTACACGACACGAACTGCAGTGGATTTCTTGGAACAGTGGAAGCCATGCAGATGATGGAAGATGAAGTAGTTGCTGCTATTGGGCCACAATCTTCAGGCATTGCTCATGTCATTTCCCATGTTATTAATGAACTCCATATACCTCTTCTATCATTTGGAGCTACTGATCCCACTTTATCTGCACTGCAATACCCGTATTTCGTTCGGACGACTCAGAGTGATCACTTCCAGATGAACGCCATTGCTGATATGGTAGATTATTTTGGATGGAGAGAGGTCATTGCCATCTTTGTAGATGATGATAATGGCAGGAGCGGGATATCGGCATTGAGTGACGCCTTGGCAAAGAAACGAGCCAGGATCTCTTATAAGGCTGCTTTCTCTCCTGGATCCCCCAATAGCGTAATAAGTGAATTGTTGGTTTCGATAAACCTGATGGAATCTCGGGTGTATATCGTACATGTCAATCCCGACACTGGTTTATCAGTATTTTCATTAGCTAAGAAACTTCAGATGATGAGCAGTGGCTATGTCTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATATTCCTGATATCATGAATCAGTTACAGGGCGTTGTAGCTCTTCGTCACCACACCCCGGACAGCGATCTGAAGAAAATTTTTGTCTCTAAATGGAAAGGACTAAAGTATAAGAAGAGTTCAAGCTTCAACTCTTATGCACTCTACGCATACGACTCTGTTTGGTTAGCAGCCCGTGCTCTCGACACGTTTCTTAAAGAAGGTGGACATATATACTTTTCTACTGACCCCAAGCTACGTGAAAACAATGGAAGCATACTGCACTTAAAATCACTTCGAGTTTTTAATGGCGGCGAACAACTCTTACAGACAATCAAGAGAACGAACTTCACCGGTGTAAGTGGACGAATTCAGTTTGGTGATGACAGAAATTTGATTCATCCAGCTTATGATATCCTTAACATTGGGGGTACTGGTATACGTAGAATCGGTTACTGGTCGAATTATTCGGGTTTATCAACTATTGCACCAGAGAATCTGTATACAAAGCCTCTTAATGCTTCCCGAAATAACCATCTATACAGTGTAATATGGCCGGGTGAAGTAACGAGCGTTCCTCGAGGATGGGTGTTCCCGCATAACGGGAAACCATTGCAAATTGTAGTACCTAACCGTGTGAGCTACAAAGCATTTGTATCTAAAGACAAGAACCCTCCAGGGGTTAAAGGGTATTGTATAGATGTCTTTGAAGCTGCCTTAAACTTGTTGCCTTATCCAGTTCCTCGCACATATATATTATATGGAGATGGAAAAGACACTCCTGAGTACAGCAATCTTGTATATGAAGTTTCACAGAATAAATATGATGCAGCTGTTGGAGATATTACGATTGTAACAAATAGGACGAAGATTGTGGACTTCACACAGCCATTTATGGAGTCGGGACTCGTTGTCGTTACTGTCGTCAACGAGGAGAAATCCAGTCCGTGGGCTTTCCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCCATATTCTTCATTTTTGTTGGAGCTGTTGTCTGGATTCTTGAGCACCGGACCAATGAAGAATTCCGTGGTCCGCCAAGGCAACAACTCATTACAATCTTCTGGTTTAGTTTCTCGACAATGTTCTTTTCTCACAAGGAAAACACCGTAAGCACCCTCGGACGGCTGGTGCTGATAATATGGCTCTTCGTCGTGTTAATTATCAATTCGAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTGCAGCAGCTAACATCAAAGATCGAAGGGATTGATAGCTTAATCTCTGGCACAGATGCCATTGGAGTGCAAGAAGGGTCATTTGCATTGAATTATCTAATTAATGAGCTGAGTATAGCAGCTTCTAGGATCATTAAACTGAAAAATCAGGAGGAATATGCCGATGCTCTTCGGCGTGGACCAGGGAATGGCGGGGTAGCTGCCATCGTTGATGAGCTTCCTTACGTCGAGCTTTTCTTGGCCGGGACGAACTGCATATTCAGGACAGTTGGACAGGAGTTCACCAAAAGTGGATGGGGATTTGCATTCCAAAGAGACTCTCCTCTTGCAGTTGATTTATCAACAGCCATTCTTCAACTCTCGGAGAACGGCGATCTTCAAAAGATCCACGACAAATGGCTGTCACGAACCGAGTGTTCAATGAGCTTGAACCAAGTNGACGTAAACCAACTATCACTAAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGTATTGCCTGCTTTATTGCTCTTTCCATATTCTTCTTTCGAGTACTATTCCAATACCGAAGATTTACCCCCGAAACCCAGCCTGAAGTCGAGGATATCGAACCTGTCAGGACGAGACGCCTTAGTCGTACTACCAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAATCAAAGGCAAGCTTAAAAGAAAAGTCAGTGAGAACAAACAAGCTAGCCAGAGCTCAGAGGCCCACCTTGATTCACCACCTTGA 2817 43.41 MKVFWIRSGHWVRTIALIFALFFEIWMPLGVIGIGVSQNTNVSSLNPRVLKVGVLFTLDSVIGRSAQPAILAAVDDVNADNSVLPGTKLKLILHDTNCSGFLGTVEAMQMMEDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPTLSALQYPYFVRTTQSDHFQMNAIADMVDYFGWREVIAIFVDDDNGRSGISALSDALAKKRARISYKAAFSPGSPNSVISELLVSINLMESRVYIVHVNPDTGLSVFSLAKKLQMMSSGYVWIATDWLPSFLDSFETNIPDIMNQLQGVVALRHHTPDSDLKKIFVSKWKGLKYKKSSSFNSYALYAYDSVWLAARALDTFLKEGGHIYFSTDPKLRENNGSILHLKSLRVFNGGEQLLQTIKRTNFTGVSGRIQFGDDRNLIHPAYDILNIGGTGIRRIGYWSNYSGLSTIAPENLYTKPLNASRNNHLYSVIWPGEVTSVPRGWVFPHNGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAALNLLPYPVPRTYILYGDGKDTPEYSNLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVNEEKSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISGTDAIGVQEGSFALNYLINELSIAASRIIKLKNQEEYADALRRGPGNGGVAAIVDELPYVELFLAGTNCIFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDVNQLSLSSFWGLFLICGIACFIALSIFFFRVLFQYRRFTPETQPEVEDIEPVRTRRLSRTTSFMHFVDKKEAEIKGKLKRKVSENKQASQSSEAHLDSPP 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2914311 2919893 + CmaCh20G006240.1 Cma20g00624 316438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00624 938 Pfam Ligand-gated ion channel 827 858 IPR001320 GO:0015276|GO:0016020
Cma20g00624 938 Pfam Bacterial extracellular solute-binding proteins, family 3 494 826 IPR001638 -
Cma20g00624 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 63 79 - -
Cma20g00624 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 123 151 - -
Cma20g00624 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 336 348 - -
Cma20g00624 938 Gene3D - 478 593 - -
Cma20g00624 938 Gene3D - 594 734 - -
Cma20g00624 938 PANTHER GLUTAMATE RECEPTOR 3.4 35 920 - -
Cma20g00624 938 SUPERFAMILY Periplasmic binding protein-like II 459 826 - -
Cma20g00624 938 Gene3D - 165 438 - -
Cma20g00624 938 Gene3D - 778 832 - -
Cma20g00624 938 SUPERFAMILY Periplasmic binding protein-like I 46 476 IPR028082 -
Cma20g00624 938 CDD PBP1_GABAb_receptor_plant 51 439 IPR044440 -
Cma20g00624 938 PIRSF IGluLR_plant 14 937 IPR017103 -
Cma20g00624 938 Pfam Receptor family ligand binding region 67 422 IPR001828 -
Cma20g00624 938 CDD GluR_Plant 482 825 - -
Cma20g00624 938 MobiDBLite consensus disorder prediction 915 938 - -
Cma20g00624 938 Gene3D - 69 413 - -
Cma20g00624 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 920 - -
Cma20g00624 938 SMART GluR_14 485 827 IPR001320 GO:0015276|GO:0016020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01829 Cma20g00624 CCT
Cma02g00166 Cma20g00624 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02028 Cma-Chr1:12944004 Cma20g00624 Cma-Chr20:2914311 0 dispersed
Cma07g00382 Cma-Chr7:1636511 Cma20g00624 Cma-Chr20:2914311 0 dispersed
Cma09g00038 Cma-Chr9:166741 Cma20g00624 Cma-Chr20:2914311 0 dispersed
Cma11g01329 Cma-Chr11:8810190 Cma20g00624 Cma-Chr20:2914311 0 dispersed
Cma11g01829 Cma-Chr11:12217237 Cma20g00624 Cma-Chr20:2914311 0 dispersed
Cma12g00660 Cma-Chr12:3530829 Cma20g00624 Cma-Chr20:2914311 4.46E-173 dispersed
Cma12g00665 Cma-Chr12:3569926 Cma20g00624 Cma-Chr20:2914311 3.99E-158 dispersed
Cma19g00801 Cma-Chr19:7732635 Cma20g00624 Cma-Chr20:2914311 0 dispersed
Cma20g00622 Cma-Chr20:2895161 Cma20g00624 Cma-Chr20:2914311 0 proximal
Cma02g00166 Cma-Chr2:764297 Cma20g00624 Cma-Chr20:2914311 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00624 K05387 - csv:101215485 1680.61