Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00628 ATGCCCGCCGGAATTATGACACAGGCGAGAAACATGCCATCGATGATTGGAAGAAATGGGAATAATGTTGGTGGATTTGTCTCTACTTCTGGCCTTGTTCTTTCTCAGTCAAGCATGATGGACGGTCAGCTCCTCCCCTTAGACATGCCTCAAAACACTTCTAAAAGCGATCTTGCTCGAATCCGAGACGATGATTTCGATAGTGCCACGAAATCAGATAGCGATAATAACCATGAACTCGTCTCTGGTGATGACCAAGATCCTCGTCCTAAAAAGAAGCGGTACCATCGGCATACTCAACATCAAATTCAAGAAATGGAAGCATTTTTCAAGGAGTGTCCTCACCCTGATGACAAACAAAGGAAGGAATTAAGCAGGGAATTGAACTTGGAGCCTCTACAAGTTAAGTTTTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACACGAGCGGCATGAGAACACCCAACTCCGAACAGAAAATGAGAAGCTTCGAGCCGATAACATGAGATATAGAGAAGCCCTTAGCAATGCCTCATGTCCCAATTGCGGCGGCCCTACTGCCATTGGTGAAATGTCTTTTGACGAACATCATCTTAGACTCGAAAACGCCCGTCTTCGCGAAGAGATCGATCGCATTTCAGCCATTGCAGCGAAGTATGTAGGCAAGCCAGTAGTGAACTACCCTCTACTTTCTCCACCGGTTCCATCTCGACCACTAGAGCTGGGAATGGGCAACTTCGGACCACAACCTGGCCTTGGAGGAGACATCCATGCCTCCACTGGTGACCTGATCCGATCAATCAGCAGCCCGATCGAGGCCGAAAAGCCCATGATCATCGAGCTTGCAGTTGCAGCCATGGAAGAGCTTACTAGAATGGCTCAGATGGGTGAGCCATTGTGGATGACTAACCTGGATGGTTCGTCCCATGTGCTCAATGAAGATGAGTACTTGAGAACGTTTCCTAGAGGCATTGGGCCTAAGCCTGCAGGGTTTAAATGTGAAGCCTCTCGTGAATCTGCCGTTGTCATCATGAACCACATTAACCTCGTGGAGATTCTCATGGACGTGAATCAATGGTCGACTCTATTTTCTGGAATTGTGTCTAGAGCTATGACGCTTGAAGTATTATCCACCGGAGTTGCTGGAAATTACAACGGAGCTCTACAAGTGATGACGTCCGAGTTTCAAGTTCCATCGCCACTAGTCCCAACTCGGGAGAGCTACTATGTTCGATATTGTAAGCAGCACGGGGACGGGAAATGGGCAGTGGTGGACATTTCATTGGACGATCTGTGCCCTACGCCCGGAGTTAGATGCCGAAGAAGACCTTCCGGTTGTTTGATCCAAGAAATGCCAAATGGTTATTCAAAGGTTACATGGGTTGAGCACGTTGAGGTGGACGATAGAGGGGTTCATAATCTTTACAGGCAGCTGGTGAGCTCCGGCCAAGCTTTTGGGGCCAAACGGTGGGTTACAACCTTAGATCGCCAATGTGAACGGCTTGCCAGCGCCATGGCCACCAATATTTCCACCGGTGATGTTGGAGTTATAACGAATCAAGAAGGAAGAAAAAGCATGTTGAAGCTAGCTGAGAGAATGGTGATAAGCTTCTGCGCTGGAGTGAGCGCCTCCACAACCCACACATGGACTACTCTGTCCGGTACGGGTGCTGACGACGTTCGAGTCATGACCCGAAAGAGCATCGATGACCCCGGGAGACCTCCGGGTATTGTCTTAAGTGCTGCAACTTCCTTCTGGCTTCCTGTTCCACCCAAAACAATCTTCGATTTCCTCCGAGATGAAAATTCTCGTAACGAGTGGGACATTCTTTCCAATGGCGGAGTAGTTCAAGAAATGGCGCATATCGCCAACGGCCACGACACTGGCAATTGTGTTTCTCTCTTACGTGTAAACAGCACGAATTCGAGCCAAAGCAACATGTTGATCCTGCAAGAAAGCTGCACGGACCCAACAGTGTCATTTGTCATCTACGCACCGGTTGACATAGTAGCGATGAACGTCGTCCTCAACGGTGGAGATCCCGACTACGTAGCACTTCTCCCCTCAGGGTTCGCCATTCTCCCAGATGGCGGCGGCGGAGAGGGGGTTTCGGGTGGGTCGTTGCTGACAGTTGCATTTCAGATACTGGTGGATTCGGTGCCAACGGCCAAACTGTCGCTTGGGTCGGTTGCAACAGTTAACAATCTGATTGCGTGTACGGTGGAGAGAATTAAAGCATCTGCCTTCCTCTCCCTCTCTTCCCCTGATTTCTTTCTGTTCGTTTGGCCATTCTTCTTTCTCCTCAACATTTTGGTAACAAGGCAATTTTGTTGA 2340 48.93 MPAGIMTQARNMPSMIGRNGNNVGGFVSTSGLVLSQSSMMDGQLLPLDMPQNTSKSDLARIRDDDFDSATKSDSDNNHELVSGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPSRPLELGMGNFGPQPGLGGDIHASTGDLIRSISSPIEAEKPMIIELAVAAMEELTRMAQMGEPLWMTNLDGSSHVLNEDEYLRTFPRGIGPKPAGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYYVRYCKQHGDGKWAVVDISLDDLCPTPGVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYRQLVSSGQAFGAKRWVTTLDRQCERLASAMATNISTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKTIFDFLRDENSRNEWDILSNGGVVQEMAHIANGHDTGNCVSLLRVNSTNSSQSNMLILQESCTDPTVSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGGGEGVSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASAFLSLSSPDFFLFVWPFFFLLNILVTRQFC 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2926078 2932185 - CmaCh20G006280.1 Cma20g00628 316442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00628 779 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 47 751 - -
Cma20g00628 779 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Cma20g00628 779 ProSiteProfiles START domain profile. 273 505 IPR002913 GO:0008289
Cma20g00628 779 SMART HOX_1 90 153 IPR001356 GO:0003677
Cma20g00628 779 SUPERFAMILY Bet v1-like 521 747 - -
Cma20g00628 779 SUPERFAMILY Bet v1-like 274 504 - -
Cma20g00628 779 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
Cma20g00628 779 MobiDBLite consensus disorder prediction 66 91 - -
Cma20g00628 779 Coils Coil 143 175 - -
Cma20g00628 779 SMART START_1 282 502 IPR002913 GO:0008289
Cma20g00628 779 CDD START_ArGLABRA2_like 277 501 - -
Cma20g00628 779 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 47 751 IPR042160 -
Cma20g00628 779 Gene3D - 79 166 - -
Cma20g00628 779 Gene3D - 337 501 IPR023393 -
Cma20g00628 779 CDD homeodomain 92 150 IPR001356 GO:0003677
Cma20g00628 779 Pfam Homeodomain 92 148 IPR001356 GO:0003677
Cma20g00628 779 MobiDBLite consensus disorder prediction 66 100 - -
Cma20g00628 779 Pfam START domain 283 502 IPR002913 GO:0008289
Cma20g00628 779 SUPERFAMILY Homeodomain-like 80 149 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma19g00929 Cma20g00628 CCT
Cma11g01832 Cma20g00628 CCT
Cma19g00929 Cma20g00628 ECH
Cma11g01832 Cma20g00628 ECH
Cma02g00163 Cma20g00628 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00163 Cma-Chr2:753284 Cma20g00628 Cma-Chr20:2926078 0 dispersed
Cma01g01144 Cma-Chr1:8366072 Cma20g00628 Cma-Chr20:2926078 2.43E-116 wgd
Cma11g01832 Cma-Chr11:12238851 Cma20g00628 Cma-Chr20:2926078 0 wgd
Cma13g00725 Cma-Chr13:6447191 Cma20g00628 Cma-Chr20:2926078 0 wgd
Cma19g00929 Cma-Chr19:8312158 Cma20g00628 Cma-Chr20:2926078 0 wgd
Cma02g00162 Cma-Chr2:752582 Cma20g00628 Cma-Chr20:2926078 4.56E-08 wgd
Cma20g00628 Cma-Chr20:2926078 Cma03g00527 Cma-Chr3:5028468 0 wgd
Cma20g00628 Cma-Chr20:2926078 Cma07g00302 Cma-Chr7:1335086 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37016 PF01852 START 2.50E-58 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00628 K09338 - csv:101214763 1392.48