Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00629 ATGAACGATTTGCTCACGGACTCGTTTGTTAGCAATGGTAAAGGCGAGGTATCGAGAGATATCGATATCGAGAAGGGAACACCAGTTCTGCTTAACAATTCTGACATGGGAATGGAGGCCTTCAATAAGCAGATACAAGAGGTTGAGGTACAAGTAGATAAGCTTTCTGGGCTTCTTATCAAACTGAAGGATGCTAATGAGGAATCCAAGGCTGTTACAAAAGCATCCCAGATGAAAGCTATCAAGAAGCGTATGGAAAAGGATATCGATGAAGTGGGAAAAATAGCTCGCAATGTCAAAGGGAATCTGGAAGCTCTAAATAAAGATAACTTGACCAATAGGCAGAAGCCTGGGTGCCAAAAGGGAACAGCCATTGACAGAGCAAGAATGAACGTGACAAATTCCTTAACAAAAAAGTTCAAGGATTTGATGATAGAATTTCAGGCCCTTCGTCAAAGAATTCAAGACGAGTACCGTGAAGTCGTGGAAAGACGAGTGATTACAGTTACCGGTACCCGACCAGATGAGATGATGATTGATCAGCTTATAGAAACTGGAAATAGTGAACAAATATTCCAGAATGCATTTGAACATATGGGACGAGGAATGGTTATCAGTACTGTGGAAGAAATTCAGGAGCGACATGACGCGGTTAAAGAAATTGAGAAAAGGCTATCGGAATTGCATCAGGTATACCTTGACATGGCAGTTTTAGTGGAAGCCCAGAGTGAAATTCTGGACAACATAGAAAATCAGGTAACGAATGCAGTCGACCACGTTCGAACAGGAACCGATGCACTCCATACAGCAAAAACCATGGAAGAAGTAACCGATGGAAATGATACCCAAAATATGAATTCAGTTTCATGGTTGATATCTTCCATATCTTTATAG 894 41.28 MNDLLTDSFVSNGKGEVSRDIDIEKGTPVLLNNSDMGMEAFNKQIQEVEVQVDKLSGLLIKLKDANEESKAVTKASQMKAIKKRMEKDIDEVGKIARNVKGNLEALNKDNLTNRQKPGCQKGTAIDRARMNVTNSLTKKFKDLMIEFQALRQRIQDEYREVVERRVITVTGTRPDEMMIDQLIETGNSEQIFQNAFEHMGRGMVISTVEEIQERHDAVKEIEKRLSELHQVYLDMAVLVEAQSEILDNIENQVTNAVDHVRTGTDALHTAKTMEEVTDGNDTQNMNSVSWLISSISL 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2935522 2939770 + CmaCh20G006290.1 Cma20g00629 316443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00629 297 SMART SynN_4 33 159 IPR006011 GO:0016020
Cma20g00629 297 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 4 274 - -
Cma20g00629 297 CDD SNARE_syntaxin1-like 207 267 - -
Cma20g00629 297 CDD SynN 38 195 IPR006011 GO:0016020
Cma20g00629 297 Coils Coil 38 65 - -
Cma20g00629 297 Pfam Syntaxin 41 242 IPR006011 GO:0016020
Cma20g00629 297 Gene3D - 33 162 - -
Cma20g00629 297 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Cma20g00629 297 Gene3D - 208 274 - -
Cma20g00629 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Cma20g00629 297 PANTHER SYNTAXIN 4 274 IPR045242 -
Cma20g00629 297 SMART tSNARE_6 203 270 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00344 Cma-Chr18:1843481 Cma20g00629 Cma-Chr20:2935522 4.02E-70 dispersed
Cma02g00159 Cma-Chr2:738486 Cma20g00629 Cma-Chr20:2935522 1.55E-41 transposed
Cma14g01106 Cma-Chr14:8118923 Cma20g00629 Cma-Chr20:2935522 9.64E-107 transposed
Cma02g00158 Cma-Chr2:737619 Cma20g00629 Cma-Chr20:2935522 8.00E-18 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00629 K08486 - csv:101214355 465.307