Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00633 ATGAGAACGGGCAGGCTTACTTCTTTGGTGTTGACCGCTATTGTTGGTCTTCTAGGCCTGATAGGCGCCACTCAAGCTCAGTTACAGCTTGGTTTCTATGCCAAAAGCTGCCCAAACGCTGAGAAGATTGTGCTGGATTTCGTTCATCAGCATATCCATAATGCCCCTTCATTGGCAGCAACTTTCATAAGAATGCACTTCCATGATTGCTTTGTTAGGGGTTGTGATGGGTCTGTGCTTATAAACTCCACTTCAAATAACCAAGCTGAGAAGGATTCTCCTCCAAATCAAACACTAAGAGGGTTTGACTTCATTGATAGAGTTAAAAGCTTACTTGAAGCTGAATGCCCTGGAGTGGTCTCTTGCGCAGATGTTCTTTCCTTGGTTACTAGAGATTCCATTGTAGCCACTGGAGGTCCTTACTGGGAAGTTCCGACTGGCCGGAGGGATGGAGTGATCTCAAGGTCATCAGAAGCCCTGGCTAACATTCCTCCTCCTTTTGGAAACCTTTCAACACTCCAAAGACTGTTCGAAGACCAAGGCCTTGATCTGAAAGACTTGGTATTACTATCTGGCGCTCACACAATCGGCATAGCACACTGCTCATCATTCAGAAACCGACTGTACAATTTCACCGGCGTAGGAGACCAAGATCCCTCTCTGGATCCAAGATACGCCGCTAACCTGAAGGCCAACAAATGCAAAACTCCGACCGACAACAGCAAGGTGGAGATGGACCCTGGAAGCCGCAACACTTTCGATCTTAGCTACTACTCTCTTCTTCTCAAAAGAAGAGGGCTTTTCGAATCCGATTCTGCTCTCACTAAAGGCGCAACTACATTGGGCCTAGTTCAGAAACTTGTTCAAGGACCCATTGAAGAGTTCTTCTCTGAATTTGCAGCATCCATTGAAAAAATGGGGCGGATTAAAGTGAAGACTGGAACTGAGGGTGAAATCAGAAGGAGATGCGCCGTCGTGAATGGTTGA 987 46.61 MRTGRLTSLVLTAIVGLLGLIGATQAQLQLGFYAKSCPNAEKIVLDFVHQHIHNAPSLAATFIRMHFHDCFVRGCDGSVLINSTSNNQAEKDSPPNQTLRGFDFIDRVKSLLEAECPGVVSCADVLSLVTRDSIVATGGPYWEVPTGRRDGVISRSSEALANIPPPFGNLSTLQRLFEDQGLDLKDLVLLSGAHTIGIAHCSSFRNRLYNFTGVGDQDPSLDPRYAANLKANKCKTPTDNSKVEMDPGSRNTFDLSYYSLLLKRRGLFESDSALTKGATTLGLVQKLVQGPIEEFFSEFAASIEKMGRIKVKTGTEGEIRRRCAVVNG 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2948709 2950483 + CmaCh20G006330.1 Cma20g00633 316447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00633 328 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Cma20g00633 328 Gene3D - 31 327 - -
Cma20g00633 328 PANTHER PEROXIDASE 14 327 - -
Cma20g00633 328 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 CDD secretory_peroxidase 27 326 IPR033905 GO:0004601|GO:0042744
Cma20g00633 328 PANTHER PEROXIDASE 25-RELATED 14 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 ProSiteProfiles Plant heme peroxidase family profile. 27 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 Gene3D Peroxidase, domain 2 164 306 - -
Cma20g00633 328 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 SUPERFAMILY Heme-dependent peroxidases 27 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma20g00633 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Cma20g00633 328 Pfam Peroxidase 46 288 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01837 Cma20g00633 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01838 Cma-Chr11:12266469 Cma20g00633 Cma-Chr20:2948709 2.69E-174 dispersed
Cma12g00394 Cma-Chr12:2033702 Cma20g00633 Cma-Chr20:2948709 1.36E-89 dispersed
Cma18g01214 Cma-Chr18:9599503 Cma20g00633 Cma-Chr20:2948709 2.04E-92 dispersed
Cma08g00188 Cma-Chr8:1059496 Cma20g00633 Cma-Chr20:2948709 4.89E-62 transposed
Cma08g01197 Cma-Chr8:7347661 Cma20g00633 Cma-Chr20:2948709 3.55E-107 transposed
Cma10g00549 Cma-Chr10:2522741 Cma20g00633 Cma-Chr20:2948709 2.24E-84 transposed
Cma19g00277 Cma-Chr19:2006785 Cma20g00633 Cma-Chr20:2948709 3.28E-78 transposed
Cma11g01837 Cma-Chr11:12261525 Cma20g00633 Cma-Chr20:2948709 2.62E-127 wgd
Cma02g00155 Cma-Chr2:726827 Cma20g00633 Cma-Chr20:2948709 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00633 K00430 - csv:101213629 590.882