Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00636 ATGGAACCTCAGTGCGAGTTCTGTGGAGTGGAGAAAGCGATTGTTTACTGTAAATCTGATTCGGCGCGTCTCTGTTTGCATTGCGATTACATCGTTCATTCGGCTAATTCATTATCACGACGCCATCTTCGATCGTTGCTGTGCGACAAGTGCAATGCTCACCCTGCCATTCTGCGCTGTATGGATGATAAAGTCTCCCTCTGTCAGGGCTGTGACTGGAGCGCCGATGATTGTTCTTCCCTTCCCCAACGCACTCACCTTCTTCATTCTTACACTGGTTCCCCTTCCACGTCTGAGTTCTCCAGGATTTGTACTTCCCTTCTCGATTCCACTTCTTGTAACACTGCCTTCGACGCCACCGCTGATTGGACCTCGCTTACGACGCCTTATGTTATTGCCGATTCCATCGATTTGACGGACGTTGAAGCTCCCTCTGCCGCTGAAAATTTGAACGACGTTCAAACTTGCTCTAAGTTTGAGACCTGGATCGCCGATCCTGCTTCTGCGTCTCCTGAGAATCCTTCTTATCAACCGGATTTTCTTTCCGATGACTCGAATCTTCCAAAGGATGCTGAAACCAATGAAAATAATGATATATGTGAGAGTCTGAATCTTGGCGATGTTTCTCTTCACTTGGAAAATGGGGAAGGGTTGTTTGACTCTCCGAAAGATGCAATGAAATTCGAGTTTGATGCTGGAGAATTGGAGTGTCTTCTAATTGACAGAAACTTTCCGGTCACTGAATCTAATGTTCCTGTTGAGGACACTATCGAGGCCTCAGATTATACGGGATTTCAATCAGCTGAAGTCGATATTTCCATGAACATGATTCGAAACGGCAATTCAAATTGCACGCTTATAAATCCTAGTTGCAAAGGAAATTTCAACATTGGATTTCCTACTGCTCAGGTTCATTCAAGTATATCAGTTTCACTGTCAAATATCACTGGCGAAAGCAGTGGTGCAGATTATCAAGAATGTGGTTTATCGCCGGCGTTTTTGACTGAAACCTCATGGGATCCTAGCATGGAAGCTATTGGTCCACTAGCAAAGGATCGGAATAGGGATAAAGCTAAGATGAGATACAATGAAAAGAAGAAAACAAGAACATTTGGAAAGCAAATAAGATACGCATCTCGCAAAGCCAGAGCTGATACTAGAAAAAGGGTTAAAGGTCGATTCGTGAAAGCAGGCGAAGCCTATGACTACGATCCTCTCGTGACAAGAAACTTTTGA 1236 44.34 MEPQCEFCGVEKAIVYCKSDSARLCLHCDYIVHSANSLSRRHLRSLLCDKCNAHPAILRCMDDKVSLCQGCDWSADDCSSLPQRTHLLHSYTGSPSTSEFSRICTSLLDSTSCNTAFDATADWTSLTTPYVIADSIDLTDVEAPSAAENLNDVQTCSKFETWIADPASASPENPSYQPDFLSDDSNLPKDAETNENNDICESLNLGDVSLHLENGEGLFDSPKDAMKFEFDAGELECLLIDRNFPVTESNVPVEDTIEASDYTGFQSAEVDISMNMIRNGNSNCTLINPSCKGNFNIGFPTAQVHSSISVSLSNITGESSGADYQECGLSPAFLTETSWDPSMEAIGPLAKDRNRDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLVTRNF 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2965397 2968065 + CmaCh20G006360.1 Cma20g00636 316450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00636 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 409 - -
Cma20g00636 411 SMART bboxneu5 1 47 IPR000315 GO:0008270
Cma20g00636 411 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515
Cma20g00636 411 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 2 409 - -
Cma20g00636 411 MobiDBLite consensus disorder prediction 168 182 - -
Cma20g00636 411 Pfam CCT motif 355 397 IPR010402 GO:0005515
Cma20g00636 411 CDD Bbox1_BBX-like 5 47 - -
Cma20g00636 411 ProSiteProfiles Zinc finger B-box type profile. 5 47 IPR000315 GO:0008270
Cma20g00636 411 MobiDBLite consensus disorder prediction 167 193 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00242 Cma20g00636 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01303 Cma-Chr11:8677273 Cma20g00636 Cma-Chr20:2965397 2.52E-64 dispersed
Cma18g00990 Cma-Chr18:8348435 Cma20g00636 Cma-Chr20:2965397 3.42E-24 dispersed
Cma19g00837 Cma-Chr19:7927917 Cma20g00636 Cma-Chr20:2965397 5.89E-64 dispersed
Cma20g00636 Cma-Chr20:2965397 Cma20g00703 Cma-Chr20:3247766 3.30E-70 dispersed
Cma11g01841 Cma-Chr11:12284810 Cma20g00636 Cma-Chr20:2965397 1.85E-10 wgd
Cma02g00151 Cma-Chr2:708702 Cma20g00636 Cma-Chr20:2965397 3.91E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37018 PF06203 CCT 1.30E-16 CL0281 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00636 - - mcha:111011254 600.897