Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00638 ATGGACGACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACAATGGAGGATCTCCCCGTCGTCGGCGCCCACTTCTCGCCGCCGCAGTCCGTCAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTCCTTCTGATAAACACAGCCTTGAGGTAGACTGCTCATATGAAGATCTGGACAGCTTAAAGGAAGTAGGTCGGAAACGTCTAAAAGCTGAAACAAGTTCTGCATCTACCTCCAAAGCCTGGAGAGAGAAACTGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTATCTGCTGTCCTGGAACCTGGAAAACTACCCAAAACAGACAAGGTTGCCATCTTGAGTGATGCTATCAGAATGATGACTGATTTACAATGTGAAATCGAGAAGCTGAAAGAATCAGAGGATGATTTGAAGGAAAAAATCAAGGAATTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGATTGAGAGCAGAGAAAGAAAAATTGGAGGTGCAAATCAAAGCAGTGAATGCTCGAGCAGCAGCTGACATCCAACATCCTCCCCCTACGTTGTCAGCTGCTTTTACAGCACAAGGACAAGCTGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCCGGCATTGCCATGTGGCAATTCTTGCCGCCTGCAACCGTCGACACGTCTCAGGATCATGTGCTCCGCCCACCAGTTGCTTAA 723 46.47 MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSDKHSLEVDCSYEDLDSLKEVGRKRLKAETSSASTSKAWREKLRRDKLNERFLELSAVLEPGKLPKTDKVAILSDAIRMMTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLEVQIKAVNARAAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2971125 2973987 - CmaCh20G006380.1 Cma20g00638 316452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00638 240 Gene3D - 68 126 IPR036638 GO:0046983
Cma20g00638 240 CDD bHLH_AtILR3_like 82 157 - -
Cma20g00638 240 Gene3D arf6 gtpase in complex with a specific effector, jip4 127 181 - -
Cma20g00638 240 Coils Coil 118 180 - -
Cma20g00638 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 153 IPR036638 GO:0046983
Cma20g00638 240 SMART finulus 83 134 IPR011598 GO:0046983
Cma20g00638 240 PANTHER BHLH TRANSCRIPTION FACTOR 4 240 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cma20g00638 240 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 4 240 - -
Cma20g00638 240 Pfam Helix-loop-helix DNA-binding domain 81 129 IPR011598 GO:0046983
Cma20g00638 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00147 Cma20g00638 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00147 Cma-Chr2:699901 Cma20g00638 Cma-Chr20:2971125 4.96E-98 dispersed
Cma04g00938 Cma-Chr4:4834656 Cma20g00638 Cma-Chr20:2971125 2.98E-89 dispersed
Cma10g00185 Cma-Chr10:845908 Cma20g00638 Cma-Chr20:2971125 4.44E-17 dispersed
Cma16g00846 Cma-Chr16:4970716 Cma20g00638 Cma-Chr20:2971125 4.55E-96 dispersed
Cma18g00230 Cma-Chr18:1237799 Cma20g00638 Cma-Chr20:2971125 6.46E-59 dispersed
Cma01g01152 Cma-Chr1:8424445 Cma20g00638 Cma-Chr20:2971125 9.00E-87 wgd
Cma13g00706 Cma-Chr13:6387711 Cma20g00638 Cma-Chr20:2971125 5.31E-71 wgd
Cma02g00146 Cma-Chr2:697750 Cma20g00638 Cma-Chr20:2971125 8.47E-22 wgd
Cma20g00638 Cma-Chr20:2971125 Cma09g00924 Cma-Chr9:4612273 9.79E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37019 PF00010 HLH 3.90E-08 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00638 - - cmax:111484113 437.958